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SRR11802024,SRR11802025,SRR11802026,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR11802024 | 1859 | Mukai2020chromatin | ChRO-seq | ligation | control | True | 1 | 1 |
| SRR11802025 | 1860 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 3 | 1 |
| SRR11802026 | 1861 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 2 | 1 |
| SRR11802027 | 1862 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 2 | 1 |
| SRR11802028 | 1863 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11802029 | 1864 | Mukai2020chromatin | ChRO-seq | ligation | control | True | 4 | 1 |
| SRR11802030 | 1865 | Mukai2020chromatin | ChRO-seq | ligation | control | True | 4 | 1 |
| SRR11802031 | 1866 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 5 | 1 |
| SRR11802032 | 1867 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11802033 | 1868 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11802034 | 1869 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 5 | 1 |
| SRR11802035 | 1870 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 5 | 1 |
| SRR11802036 | 1871 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11802037 | 1872 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 3 | 1 |
| SRR11802038 | 1873 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 5 | 1 |
| SRR11802039 | 1874 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11802040 | 1875 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11802041 | 1876 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 3 | 1 |
| SRR11802042 | 1877 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11802043 | 1878 | Mukai2020chromatin | ChRO-seq | ligation | control | True | 1 | 1 |
| SRR11802044 | 1879 | Mukai2020chromatin | ChRO-seq | ligation | experimental | False | 1 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR11802024 | C. lupus familiaris | tissue | spleen | German shepherd | |||
| SRR11802025 | C. lupus familiaris | tissue | spleen hemangiosarcoma | German shepherd | |||
| SRR11802026 | C. lupus familiaris | tissue | spleen hemangiosarcoma | golden retriever | |||
| SRR11802027 | C. lupus familiaris | tissue | spleen hemangiosarcoma | golden retriever | |||
| SRR11802028 | C. lupus familiaris | tissue | spleen hemangiosarcoma | standard poodle | |||
| SRR11802029 | C. lupus familiaris | tissue | spleen | boxer | |||
| SRR11802030 | C. lupus familiaris | tissue | spleen | pit bull | |||
| SRR11802031 | C. lupus familiaris | tissue | spleen hemangiosarcoma | pit bull | |||
| SRR11802032 | C. lupus familiaris | tissue | spleen hemangiosarcoma | German shepherd | |||
| SRR11802033 | C. lupus familiaris | tissue | spleen hemangiosarcoma | mixed breed | |||
| SRR11802034 | C. lupus familiaris | tissue | spleen hemangiosarcoma | golden retriever | |||
| SRR11802035 | C. lupus familiaris | tissue | spleen hemangiosarcoma | lab cross | |||
| SRR11802036 | C. lupus familiaris | tissue | spleen hemangiosarcoma | flat-coated retriever | |||
| SRR11802037 | C. lupus familiaris | tissue | spleen hemangiosarcoma | labrador retriever | |||
| SRR11802038 | C. lupus familiaris | tissue | spleen hemangiosarcoma | bloodhound | |||
| SRR11802039 | C. lupus familiaris | tissue | spleen hemangiosarcoma | mixed breed | |||
| SRR11802040 | C. lupus familiaris | tissue | spleen hemangiosarcoma | Chesapeake Bay retriever | |||
| SRR11802041 | C. lupus familiaris | tissue | spleen hemangiosarcoma | Rhodesian ridgeback | |||
| SRR11802042 | C. lupus familiaris | tissue | spleen hemangiosarcoma | mixed breed | |||
| SRR11802043 | C. lupus familiaris | tissue | spleen | German shepherd | |||
| SRR11802044 | C. lupus familiaris | tissue | spleen hemangiosarcoma | German shepherd |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR11802024 | no treatment | None | None | None | |
| SRR11802025 | no treatment | None | None | None | |
| SRR11802026 | no treatment | None | None | None | |
| SRR11802027 | no treatment | None | None | None | |
| SRR11802028 | no treatment | None | None | None | |
| SRR11802029 | no treatment | None | None | None | |
| SRR11802030 | no treatment | None | None | None | |
| SRR11802031 | no treatment | None | None | None | |
| SRR11802032 | no treatment | None | None | None | |
| SRR11802033 | no treatment | None | None | None | |
| SRR11802034 | no treatment | None | None | None | |
| SRR11802035 | no treatment | None | None | None | |
| SRR11802036 | no treatment | None | None | None | |
| SRR11802037 | no treatment | None | None | None | |
| SRR11802038 | no treatment | None | None | None | |
| SRR11802039 | no treatment | None | None | None | |
| SRR11802040 | no treatment | None | None | None | |
| SRR11802041 | no treatment | None | None | None | |
| SRR11802042 | no treatment | None | None | None | |
| SRR11802043 | no treatment | None | None | None | |
| SRR11802044 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR11802024 | 76 | 51,253,919 | 0.33848 | 0.3766 | 2.79595 | 0.79315 | 1 | 1 |
| SRR11802025 | 76 | 50,296,978 | 0.65446 | 0.4317 | 2.27467 | 0.55116 | 3 | 1 |
| SRR11802026 | 76 | 50,792,984 | 0.64844 | 0.4152 | 4.53399 | 0.53983 | 2 | 2 |
| SRR11802027 | 76 | 60,522,479 | 0.51826 | 0.4061 | 3.24393 | 0.68593 | 2 | 2 |
| SRR11802028 | 85 | 29,295,590 | 0.90474 | 0.2864 | 3.5873 | 0.08378 | 4 | 2 |
| SRR11802029 | 85 | 14,290,786 | 0.34353 | 0.319 | 4.39419 | 0.60297 | 4 | 2 |
| SRR11802030 | 85 | 20,711,692 | 0.40021 | 0.2523 | 4.06985 | 0.5446 | 4 | 2 |
| SRR11802031 | 85 | 12,236,944 | 0.55784 | 0.2799 | 5.41481 | 0.2843 | 5 | 3 |
| SRR11802032 | 85 | 19,209,874 | 0.63929 | 0.2337 | 6.13934 | 0.32097 | 4 | 3 |
| SRR11802033 | 85 | 19,465,213 | 0.37827 | 0.3366 | 4.05788 | 0.61667 | 4 | 2 |
| SRR11802034 | 85 | 12,912,980 | 0.81488 | 0.2031 | 4.54688 | 0.0616 | 5 | 2 |
| SRR11802035 | 85 | 16,645,960 | 0.76504 | 0.2108 | 4.04348 | 0.10341 | 5 | 2 |
| SRR11802036 | 85 | 19,275,239 | 0.42021 | 0.2832 | 4.42387 | 0.56332 | 4 | 2 |
| SRR11802037 | 85 | 22,845,515 | 0.59826 | 0.4033 | 5.54372 | 0.42701 | 3 | 3 |
| SRR11802038 | 85 | 12,465,836 | 0.56095 | 0.2688 | 5.55446 | 0.33776 | 5 | 3 |
| SRR11802039 | 85 | 17,987,942 | 0.43394 | 0.3445 | 4.13986 | 0.55195 | 4 | 2 |
| SRR11802040 | 85 | 9,274,710 | 0.40185 | 0.437 | 4.18994 | 0.47923 | 4 | 2 |
| SRR11802041 | 85 | 18,737,050 | 0.42063 | 0.4675 | 3.84753 | 0.58963 | 3 | 2 |
| SRR11802042 | 85 | 25,541,654 | 0.57613 | 0.2952 | 4.84528 | 0.43251 | 4 | 2 |
| SRR11802043 | 76 | 48,299,963 | 0.27896 | 0.4141 | 2.78351 | 0.8343 | 1 | 1 |
| SRR11802044 | 76 | 43,678,224 | 0.414 | 0.3939 | 2.49605 | 0.71275 | 1 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR11802024 | None | None | None | None | None | None | None | None |
| SRR11802025 | None | None | None | None | None | None | None | None |
| SRR11802026 | None | None | None | None | None | None | None | None |
| SRR11802027 | None | None | None | None | None | None | None | None |
| SRR11802028 | None | None | None | None | None | None | None | None |
| SRR11802029 | None | None | None | None | None | None | None | None |
| SRR11802030 | None | None | None | None | None | None | None | None |
| SRR11802031 | None | None | None | None | None | None | None | None |
| SRR11802032 | None | None | None | None | None | None | None | None |
| SRR11802033 | None | None | None | None | None | None | None | None |
| SRR11802034 | None | None | None | None | None | None | None | None |
| SRR11802035 | None | None | None | None | None | None | None | None |
| SRR11802036 | None | None | None | None | None | None | None | None |
| SRR11802037 | None | None | None | None | None | None | None | None |
| SRR11802038 | None | None | None | None | None | None | None | None |
| SRR11802039 | None | None | None | None | None | None | None | None |
| SRR11802040 | None | None | None | None | None | None | None | None |
| SRR11802041 | None | None | None | None | None | None | None | None |
| SRR11802042 | None | None | None | None | None | None | None | None |
| SRR11802043 | None | None | None | None | None | None | None | None |
| SRR11802044 | None | None | None | None | None | None | None | None |
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