DBNascent | Samples

SRZ6290499,SRZ6290503,SRZ6290531,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRZ6290499	2111	Rao2017cohesin	PRO-seq	ligation	control	True	1	1
SRZ6290503	2112	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	1
SRZ6290531	2119	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	1
SRZ6290535	2120	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	1
SRZ6290507	2113	Rao2017cohesin	PRO-seq	ligation	control	True	1	2
SRZ6290511	2114	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	2
SRZ6290515	2115	Rao2017cohesin	PRO-seq	ligation	control	True	1	3
SRZ6290519	2116	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	3
SRZ6290523	2117	Rao2017cohesin	PRO-seq	ligation	control	True	1	4
SRZ6290527	2118	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	4
SRZ6290539	2121	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	2
SRZ6290543	2122	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	2
SRZ6290547	2123	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	3
SRZ6290551	2124	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	3
SRZ6290555	2125	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	4
SRZ6290559	2126	Rao2017cohesin	PRO-seq	ligation	experimental	False	1	4

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRZ6290499	H. sapiens	cell line	HCT116
SRZ6290503	H. sapiens	cell line	HCT116
SRZ6290531	H. sapiens	cell line	HCT116			Rad21 auxin-inducible degron
SRZ6290535	H. sapiens	cell line	HCT116			Rad21 auxin-inducible degron
SRZ6290507	H. sapiens	cell line	HCT116
SRZ6290511	H. sapiens	cell line	HCT116
SRZ6290515	H. sapiens	cell line	HCT116
SRZ6290519	H. sapiens	cell line	HCT116
SRZ6290523	H. sapiens	cell line	HCT116
SRZ6290527	H. sapiens	cell line	HCT116
SRZ6290539	H. sapiens	cell line	HCT116			Rad21 auxin-inducible degron
SRZ6290543	H. sapiens	cell line	HCT116			Rad21 auxin-inducible degron
SRZ6290547	H. sapiens	cell line	HCT116			Rad21 auxin-inducible degron
SRZ6290551	H. sapiens	cell line	HCT116			Rad21 auxin-inducible degron
SRZ6290555	H. sapiens	cell line	HCT116			Rad21 auxin-inducible degron
SRZ6290559	H. sapiens	cell line	HCT116			Rad21 auxin-inducible degron

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRZ6290499	vehicle	growth media	-6 hr	0 hr	6 hr
SRZ6290503	treatment	indoleacetic acid (500 microM)	-6 hr	0 hr	6 hr
SRZ6290531	vehicle	growth media	-6 hr	0 hr	6 hr
SRZ6290535	treatment	indoleacetic acid (500 microM)	-6 hr	0 hr	6 hr
SRZ6290507	vehicle	growth media	-6 hr	0 hr	6 hr
SRZ6290511	treatment	indoleacetic acid (500 microM)	-6 hr	0 hr	6 hr
SRZ6290515	vehicle	growth media	-6 hr	0 hr	6 hr
SRZ6290519	treatment	indoleacetic acid (500 microM)	-6 hr	0 hr	6 hr
SRZ6290523	vehicle	growth media	-6 hr	0 hr	6 hr
SRZ6290527	treatment	indoleacetic acid (500 microM)	-6 hr	0 hr	6 hr
SRZ6290539	vehicle	growth media	-6 hr	0 hr	6 hr
SRZ6290543	treatment	indoleacetic acid (500 microM)	-6 hr	0 hr	6 hr
SRZ6290547	vehicle	growth media	-6 hr	0 hr	6 hr
SRZ6290551	treatment	indoleacetic acid (500 microM)	-6 hr	0 hr	6 hr
SRZ6290555	vehicle	growth media	-6 hr	0 hr	6 hr
SRZ6290559	treatment	indoleacetic acid (500 microM)	-6 hr	0 hr	6 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRZ6290499	30	49,804,765	0.1617	0.9205	4.76076	0.76771	1	2
SRZ6290503	30	36,781,145	0.10641	0.9192	4.25919	0.83557	1	2
SRZ6290531	30	36,472,542	0.07884	0.9169	3.89618	0.8735	1	2
SRZ6290535	30	28,356,544	0.08339	0.9225	3.73935	0.85048	1	2
SRZ6290507	30	34,872,119	0.08106	0.9208	4.25514	0.83026	1	2
SRZ6290511	30	35,164,030	0.09774	0.9223	4.02612	0.79232	1	2
SRZ6290515	30	29,515,421	0.0769	0.9155	4.36141	0.83311	1	2
SRZ6290519	30	43,544,756	0.10265	0.9209	3.76388	0.80596	1	2
SRZ6290523	30	39,578,023	0.07564	0.9157	4.05724	0.8685	1	2
SRZ6290527	30	35,619,748	0.10178	0.9176	4.04325	0.82891	1	2
SRZ6290539	30	37,596,302	0.09793	0.919	4.03963	0.86875	1	2
SRZ6290543	30	39,506,234	0.10814	0.9169	3.78747	0.87495	1	2
SRZ6290547	30	37,223,443	0.13462	0.9155	4.01718	0.85921	1	2
SRZ6290551	30	39,494,317	0.13231	0.9123	3.83556	0.86967	1	2
SRZ6290555	30	35,240,177	0.09144	0.9207	4.00039	0.81328	1	2
SRZ6290559	30	33,869,204	0.11217	0.9209	3.64485	0.78294	1	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRZ6290499	33749	16025	11648	6805	27246	7365	11565	6403
SRZ6290503	30799	14774	10542	6187	25160	7839	10241	5677
SRZ6290531	27904	14070	9632	4976	23284	7227	9831	4637
SRZ6290535	29784	14116	10342	5819	23172	7584	9262	4959
SRZ6290507	29904	14530	10136	5943	24170	7822	9785	5213
SRZ6290511	30995	15441	10203	5754	23657	7716	9477	5067
SRZ6290515	28657	14063	10093	5205	22240	7543	9051	4388
SRZ6290519	30356	15820	9969	5428	25168	7643	10588	5414
SRZ6290523	31226	14539	10975	6531	26480	7383	11545	5949
SRZ6290527	29992	14905	10414	5400	23852	7450	10037	4931
SRZ6290539	30079	14124	10725	5928	25145	7219	10780	5419
SRZ6290543	33506	14485	11842	7665	27887	7527	11844	6837
SRZ6290547	27892	12966	10195	5275	23591	6787	10241	4915
SRZ6290551	33338	13898	12194	7840	28016	7255	12257	6758
SRZ6290555	28333	14158	9641	5251	23177	7786	9494	4720
SRZ6290559	32520	15198	11156	6735	25032	7848	10198	5607