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SRR592725,SRR592726,SRR592727,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR592725 | 2204 | Saunders2013extensive | GRO-seq | ligation | control | False | 5 | 1 |
| SRR592726 | 2205 | Saunders2013extensive | GRO-seq | ligation | control | False | 5 | 2 |
| SRR592727 | 2206 | Saunders2013extensive | GRO-seq | ligation | control | False | 5 | 1 |
| SRR592728 | 2207 | Saunders2013extensive | GRO-seq | ligation | control | False | 5 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR592725 | D. melanogaster | tissue | embryo | yellow-white | |||
| SRR592726 | D. melanogaster | tissue | embryo | yellow-white | |||
| SRR592727 | D. melanogaster | tissue | embryo | yellow-white | |||
| SRR592728 | D. melanogaster | tissue | embryo | yellow-white |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR592725 | treatment | gestation | -2 hr | 0 hr | 2 hr |
| SRR592726 | treatment | gestation | -2 hr | 0 hr | 2 hr |
| SRR592727 | treatment | gestation | -3 hr | 0 hr | 3 hr |
| SRR592728 | treatment | gestation | -3 hr | 0 hr | 3 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR592725 | 46 | 4,677,369 | 0.46513 | 0.6722 | 1.79672 | 0.41748 | 5 | 1 |
| SRR592726 | 46 | 3,358,140 | 0.43736 | 0.6729 | 1.81226 | 0.40086 | 5 | 1 |
| SRR592727 | 39 | 1,768,718 | 0.32015 | 0.5983 | 1.82075 | 0.42359 | 5 | 1 |
| SRR592728 | 39 | 1,561,230 | 0.34441 | 0.6416 | 1.68661 | 0.3972 | 5 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR592725 | None | None | None | None | None | None | None | None |
| SRR592726 | None | None | None | None | None | None | None | None |
| SRR592727 | None | None | None | None | None | None | None | None |
| SRR592728 | None | None | None | None | None | None | None | None |
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