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SRR618498,SRR618499,SRR618500,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR618498 | 2208 | Schaaf2013genome | PRO-seq | ligation | control | False | 3 | 1 |
| SRR618499 | 2209 | Schaaf2013genome | PRO-seq | ligation | control | False | 3 | 2 |
| SRR618500 | 2210 | Schaaf2013genome | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR618501 | 2211 | Schaaf2013genome | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR618502 | 2212 | Schaaf2013genome | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR618503 | 2213 | Schaaf2013genome | PRO-seq | ligation | experimental | False | 3 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR618498 | D. melanogaster | cell line | ML-DmBG3-c2 | ||||
| SRR618499 | D. melanogaster | cell line | ML-DmBG3-c2 | ||||
| SRR618500 | D. melanogaster | cell line | ML-DmBG3-c2 | ||||
| SRR618501 | D. melanogaster | cell line | ML-DmBG3-c2 | ||||
| SRR618502 | D. melanogaster | cell line | ML-DmBG3-c2 | ||||
| SRR618503 | D. melanogaster | cell line | ML-DmBG3-c2 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR618498 | treatment | dsRNA control (10 microg/well) | None | None | None |
| SRR618499 | treatment | dsRNA control (10 microg/well) | None | None | None |
| SRR618500 | treatment | dsRNA Rad21 (10 microg/well) | None | None | None |
| SRR618501 | treatment | dsRNA Rad21 (10 microg/well) | None | None | None |
| SRR618502 | treatment | dsRNA Nipped-B (10 microg/well) | None | None | None |
| SRR618503 | treatment | dsRNA Nipped-B (10 microg/well) | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR618498 | 50 | 20,297,335 | 0.70086 | 0.8165 | 2.27686 | 0.32756 | 3 | 1 |
| SRR618499 | 50 | 20,324,378 | 0.68159 | 0.7999 | 2.22192 | 0.34309 | 3 | 1 |
| SRR618500 | 50 | 21,859,465 | 0.68192 | 0.824 | 2.36108 | 0.35908 | 3 | 1 |
| SRR618501 | 50 | 22,797,504 | 0.69315 | 0.8209 | 2.3538 | 0.35061 | 3 | 1 |
| SRR618502 | 50 | 20,811,589 | 0.69359 | 0.7901 | 2.06975 | 0.33033 | 3 | 1 |
| SRR618503 | 50 | 27,349,781 | 0.73172 | 0.8083 | 2.22394 | 0.31896 | 3 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR618498 | None | None | None | None | None | None | None | None |
| SRR618499 | None | None | None | None | None | None | None | None |
| SRR618500 | None | None | None | None | None | None | None | None |
| SRR618501 | None | None | None | None | None | None | None | None |
| SRR618502 | None | None | None | None | None | None | None | None |
| SRR618503 | None | None | None | None | None | None | None | None |
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