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SRR12774945,SRR12774946,SRR12774947,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR12774945 | 2258 | Shamie2020unpublished | GRO-cap | ligation | experimental | False | 4 | 1 |
| SRR12774946 | 2259 | Shamie2020unpublished | GRO-cap | ligation | control | True | 4 | 1 |
| SRR12774947 | 2260 | Shamie2020unpublished | GRO-cap | ligation | control | True | 5 | 1 |
| SRR12774948 | 2261 | Shamie2020unpublished | GRO-cap | ligation | control | True | 3 | 1 |
| SRR12774949 | 2262 | Shamie2020unpublished | GRO-cap | ligation | control | True | 3 | 2 |
| SRR12774950 | 2263 | Shamie2020unpublished | GRO-cap | ligation | control | True | 4 | 1 |
| SRR12774951 | 2264 | Shamie2020unpublished | GRO-cap | ligation | control | True | 5 | 1 |
| SRR12774952 | 2265 | Shamie2020unpublished | GRO-cap | ligation | control | True | 4 | 1 |
| SRR12774937 | 2250 | Shamie2020unpublished | GRO-seq | ligation | experimental | False | 4 | 1 |
| SRR12774938 | 2251 | Shamie2020unpublished | GRO-seq | ligation | control | True | 4 | 1 |
| SRR12774939 | 2252 | Shamie2020unpublished | GRO-seq | ligation | control | True | 4 | 1 |
| SRR12774940 | 2253 | Shamie2020unpublished | GRO-seq | ligation | control | True | 2 | 1 |
| SRR12774941 | 2254 | Shamie2020unpublished | GRO-seq | ligation | control | True | 2 | 2 |
| SRR12774942 | 2255 | Shamie2020unpublished | GRO-seq | ligation | control | True | 3 | 1 |
| SRR12774943 | 2256 | Shamie2020unpublished | GRO-seq | ligation | control | True | 4 | 1 |
| SRR12774944 | 2257 | Shamie2020unpublished | GRO-seq | ligation | control | True | 4 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR12774945 | C. griseus | primary cell | bone marrow derived macrophage | ||||
| SRR12774946 | C. griseus | primary cell | bone marrow derived macrophage | ||||
| SRR12774947 | C. griseus | tissue | brain | ||||
| SRR12774948 | C. griseus | cell line | CHO-K1 | ||||
| SRR12774949 | C. griseus | cell line | CHO-K1 | ||||
| SRR12774950 | C. griseus | tissue | kidney | ||||
| SRR12774951 | C. griseus | tissue | liver | ||||
| SRR12774952 | C. griseus | tissue | lung | ||||
| SRR12774937 | C. griseus | primary cell | bone marrow derived macrophage | ||||
| SRR12774938 | C. griseus | primary cell | bone marrow derived macrophage | ||||
| SRR12774939 | C. griseus | tissue | brain | ||||
| SRR12774940 | C. griseus | cell line | CHO-K1 | ||||
| SRR12774941 | C. griseus | cell line | CHO-K1 | ||||
| SRR12774942 | C. griseus | tissue | kidney | ||||
| SRR12774943 | C. griseus | tissue | liver | ||||
| SRR12774944 | C. griseus | tissue | lung |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR12774945 | treatment | Kdo2-Lipid A (10 ng/mL) | -1 hr | 0 hr | 1 hr |
| SRR12774946 | no treatment | None | None | None | |
| SRR12774947 | no treatment | None | None | None | |
| SRR12774948 | no treatment | None | None | None | |
| SRR12774949 | no treatment | None | None | None | |
| SRR12774950 | no treatment | None | None | None | |
| SRR12774951 | no treatment | None | None | None | |
| SRR12774952 | no treatment | None | None | None | |
| SRR12774937 | treatment | Kdo2-Lipid A (10 ng/mL) | -1 hr | 0 hr | 1 hr |
| SRR12774938 | no treatment | None | None | None | |
| SRR12774939 | no treatment | None | None | None | |
| SRR12774940 | no treatment | None | None | None | |
| SRR12774941 | no treatment | None | None | None | |
| SRR12774942 | no treatment | None | None | None | |
| SRR12774943 | no treatment | None | None | None | |
| SRR12774944 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR12774945 | 75 | 13,876,050 | 0.93317 | 0.5926 | 47.9191 | 0.06281 | 4 | 5 |
| SRR12774946 | 75 | 11,777,408 | 0.90913 | 0.4726 | 130.146 | 0.0753 | 4 | 5 |
| SRR12774947 | 75 | 31,106,849 | 0.9609 | 0.8358 | 30.5466 | 0.08687 | 5 | 5 |
| SRR12774948 | 76 | 28,888,805 | 0.76368 | 0.9093 | 8.33833 | 0.33516 | 3 | 4 |
| SRR12774949 | 76 | 23,048,346 | 0.69364 | 0.9275 | 9.9284 | 0.38636 | 3 | 5 |
| SRR12774950 | 75 | 22,737,959 | 0.93582 | 0.8178 | 38.2749 | 0.11201 | 4 | 5 |
| SRR12774951 | 75 | 2,503,588 | 0.78171 | 0.6516 | 105.775 | 0.06374 | 5 | 5 |
| SRR12774952 | 75 | 18,619,171 | 0.93822 | 0.8361 | 41.3851 | 0.09349 | 4 | 5 |
| SRR12774937 | 75 | 7,917,128 | 0.42585 | 0.6636 | 53.8296 | 0.49832 | 4 | 5 |
| SRR12774938 | 75 | 7,517,469 | 0.34448 | 0.6829 | 64.3302 | 0.58055 | 4 | 5 |
| SRR12774939 | 75 | 9,333,054 | 0.22689 | 0.7553 | 30.178 | 0.73249 | 4 | 5 |
| SRR12774940 | 76 | 33,004,468 | 0.50396 | 0.6989 | 290.091 | 0.56291 | 2 | 5 |
| SRR12774941 | 76 | 29,522,529 | 0.51848 | 0.6753 | 349.917 | 0.53068 | 2 | 5 |
| SRR12774942 | 75 | 11,137,270 | 0.22437 | 0.7586 | 65.0938 | 0.74325 | 3 | 5 |
| SRR12774943 | 75 | 8,351,236 | 0.40015 | 0.5935 | 346.408 | 0.5411 | 4 | 5 |
| SRR12774944 | 75 | 10,094,636 | 0.187 | 0.7794 | 41.3242 | 0.7794 | 4 | 5 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR12774945 | None | None | None | None | None | None | None | None |
| SRR12774946 | None | None | None | None | None | None | None | None |
| SRR12774947 | None | None | None | None | None | None | None | None |
| SRR12774948 | None | None | None | None | None | None | None | None |
| SRR12774949 | None | None | None | None | None | None | None | None |
| SRR12774950 | None | None | None | None | None | None | None | None |
| SRR12774951 | None | None | None | None | None | None | None | None |
| SRR12774952 | None | None | None | None | None | None | None | None |
| SRR12774937 | None | None | None | None | None | None | None | None |
| SRR12774938 | None | None | None | None | None | None | None | None |
| SRR12774939 | None | None | None | None | None | None | None | None |
| SRR12774940 | None | None | None | None | None | None | None | None |
| SRR12774941 | None | None | None | None | None | None | None | None |
| SRR12774942 | None | None | None | None | None | None | None | None |
| SRR12774943 | None | None | None | None | None | None | None | None |
| SRR12774944 | None | None | None | None | None | None | None | None |
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