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SRZ1744498,SRZ1744500,SRZ1744502,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | QC score | Replicate | Outlier? |
| SRZ1744498 | 2612 | Wang2015molecular | GRO-seq | ligation | control | 3 | 1 | No |
| SRZ1744500 | 2613 | Wang2015molecular | GRO-seq | ligation | experimental | 4 | 1 | No |
| SRZ1744502 | 2614 | Wang2015molecular | GRO-seq | ligation | experimental | 4 | 1 | No |
| SRZ1744504 | 2615 | Wang2015molecular | GRO-seq | ligation | experimental | 3 | 1 | No |
| SRZ1744506 | 2616 | Wang2015molecular | GRO-seq | ligation | experimental | 3 | 1 | No |
| SRZ1744508 | 2617 | Wang2015molecular | GRO-seq | ligation | control | 3 | 1 | No |
| SRZ1744510 | 2618 | Wang2015molecular | GRO-seq | ligation | experimental | 4 | 1 | No |
| SRZ1744512 | 2619 | Wang2015molecular | GRO-seq | ligation | experimental | 3 | 1 | No |
| SRZ1744514 | 2620 | Wang2015molecular | GRO-seq | ligation | experimental | 3 | 1 | No |
| SRZ1744516 | 2621 | Wang2015molecular | GRO-seq | ligation | experimental | 3 | 1 | No |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRZ1744498 | M. musculus | cell line | ESC | Tdg fl/fl | |||
| SRZ1744500 | M. musculus | cell line | ESC | Tdg fl/fl | |||
| SRZ1744502 | M. musculus | cell line | ESC | Tdg fl/fl | |||
| SRZ1744504 | M. musculus | cell line | ESC | Tdg fl/fl | |||
| SRZ1744506 | M. musculus | cell line | ESC | Tdg fl/fl | |||
| SRZ1744508 | M. musculus | cell line | ESC | Tdg -/- | |||
| SRZ1744510 | M. musculus | cell line | ESC | Tdg -/- | |||
| SRZ1744512 | M. musculus | cell line | ESC | Tdg -/- | |||
| SRZ1744514 | M. musculus | cell line | ESC | Tdg -/- | |||
| SRZ1744516 | M. musculus | cell line | ESC | Tdg -/- |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRZ1744498 | no treatment | None | None | None | |
| SRZ1744500 | treatment | DRB (100 mM) | -3 hr | 0 hr | 3 hr |
| SRZ1744502 | treatment | DRB (100 mM) | -190 min | -10 min | 3 hr |
| SRZ1744504 | treatment | DRB (100 mM) | -200 min | -20 min | 3 hr |
| SRZ1744506 | treatment | DRB (100 mM) | -210 min | -30 min | 3 hr |
| SRZ1744508 | no treatment | None | None | None | |
| SRZ1744510 | treatment | DRB (100 mM) | -3 hr | 0 hr | 3 hr |
| SRZ1744512 | treatment | DRB (100 mM) | -190 min | -10 min | 3 hr |
| SRZ1744514 | treatment | DRB (100 mM) | -200 min | -20 min | 3 hr |
| SRZ1744516 | treatment | DRB (100 mM) | -210 min | -30 min | 3 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRZ1744498 | 40 | 41,942,995 | 0.75811 | 0.5338 | 1.88355 | 0.2532 | 3 | 1 |
| SRZ1744500 | 40 | 27,927,607 | 0.86155 | 0.3777 | 1.6383 | 0.1366 | 4 | 1 |
| SRZ1744502 | 40 | 45,746,699 | 0.80618 | 0.515 | 1.3548 | 0.20494 | 4 | 2 |
| SRZ1744504 | 40 | 41,986,368 | 0.7452 | 0.5234 | 1.7267 | 0.26677 | 3 | 1 |
| SRZ1744506 | 40 | 69,193,264 | 0.76692 | 0.4902 | 1.70677 | 0.25161 | 3 | 1 |
| SRZ1744508 | 40 | 42,592,723 | 0.77191 | 0.5147 | 1.77289 | 0.2392 | 3 | 1 |
| SRZ1744510 | 40 | 21,326,835 | 0.85168 | 0.4631 | 1.91054 | 0.14531 | 4 | 1 |
| SRZ1744512 | 40 | 38,368,620 | 0.72832 | 0.5075 | 2.13905 | 0.2844 | 3 | 2 |
| SRZ1744514 | 40 | 44,684,205 | 0.6658 | 0.5162 | 2.20418 | 0.35045 | 3 | 2 |
| SRZ1744516 | 40 | 34,872,535 | 0.68376 | 0.5548 | 1.84941 | 0.32768 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRZ1744498 | 15300 | 5703 | 4545 | 3496 | 10256 | 4683 | 2306 | 2370 |
| SRZ1744500 | 9728 | 3787 | 3406 | 1420 | 7909 | 4174 | 1896 | 1136 |
| SRZ1744502 | 14683 | 4206 | 5405 | 3247 | 8026 | 3122 | 2301 | 1951 |
| SRZ1744504 | 12535 | 3637 | 4508 | 2819 | 7292 | 2640 | 2113 | 1960 |
| SRZ1744506 | 16285 | 5095 | 5780 | 3632 | 11703 | 4238 | 3432 | 3047 |
| SRZ1744508 | 13226 | 4909 | 3986 | 2887 | 8608 | 3906 | 1943 | 2037 |
| SRZ1744510 | 8685 | 3057 | 3130 | 1331 | 6528 | 3289 | 1614 | 1043 |
| SRZ1744512 | 17525 | 4333 | 6812 | 4123 | 8592 | 2969 | 2717 | 2278 |
| SRZ1744514 | 14736 | 3714 | 5677 | 3549 | 8897 | 2726 | 2940 | 2598 |
| SRZ1744516 | 10938 | 2772 | 4305 | 2570 | 6686 | 2090 | 2221 | 1963 |
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