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SRR6661081,SRR6661082,SRR6661083,...
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| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR6661081 | 2854 | Zhu2018rna | NET-seq | ligation | control | True | 0 | 1 |
| SRR6661082 | 2855 | Zhu2018rna | NET-seq | ligation | control | True | 0 | 2 |
| SRR6661083 | 2856 | Zhu2018rna | NET-seq | ligation | control | True | 0 | 1 |
| SRR6661084 | 2857 | Zhu2018rna | NET-seq | ligation | control | True | 0 | 2 |
| SRR6661086 | 2858 | Zhu2018rna | NET-seq | ligation | control | True | 0 | 2 |
| SRR6661087 | 2859 | Zhu2018rna | NET-seq | ligation | control | True | 0 | 1 |
| SRR6661088 | 2860 | Zhu2018rna | NET-seq | ligation | control | True | 0 | 2 |
| SRZ6661079 | 2879 | Zhu2018rna | GRO-seq | circularization | control | True | 5 | 1 |
| SRZ6661080 | 2880 | Zhu2018rna | GRO-seq | circularization | control | True | 5 | 2 |
| SRZ6661085 | 2881 | Zhu2018rna | NET-seq | ligation | control | True | 0 | 1 |
| SRR7518307 | 2861 | Zhu2018rna | GRO-seq | circularization | control | True | 3 | 1 |
| SRR7518308 | 2862 | Zhu2018rna | GRO-seq | circularization | control | True | 4 | 2 |
| SRR7518309 | 2863 | Zhu2018rna | GRO-seq | circularization | control | True | 3 | 1 |
| SRR7518310 | 2864 | Zhu2018rna | GRO-seq | circularization | control | True | 3 | 2 |
| SRR7518311 | 2865 | Zhu2018rna | GRO-seq | circularization | control | True | 3 | 1 |
| SRR7518312 | 2866 | Zhu2018rna | GRO-seq | circularization | control | True | 3 | 2 |
| SRR7518313 | 2867 | Zhu2018rna | NET-seq | ligation | control | True | 4 | 1 |
| SRR7518314 | 2868 | Zhu2018rna | NET-seq | ligation | control | True | 4 | 2 |
| SRR7518315 | 2869 | Zhu2018rna | NET-seq | ligation | experimental | False | 4 | 1 |
| SRR7518316 | 2870 | Zhu2018rna | NET-seq | ligation | experimental | False | 4 | 2 |
| SRR7518317 | 2871 | Zhu2018rna | NET-seq | ligation | control | True | 3 | 1 |
| SRR7518318 | 2872 | Zhu2018rna | NET-seq | ligation | control | True | 3 | 2 |
| SRR7518319 | 2873 | Zhu2018rna | NET-seq | ligation | experimental | False | 4 | 1 |
| SRR7518320 | 2874 | Zhu2018rna | NET-seq | ligation | experimental | False | 4 | 2 |
| SRR7518321 | 2875 | Zhu2018rna | NET-seq | ligation | control | True | 3 | 1 |
| SRR7518322 | 2876 | Zhu2018rna | NET-seq | ligation | control | True | 3 | 2 |
| SRR7518323 | 2877 | Zhu2018rna | NET-seq | ligation | experimental | False | 4 | 1 |
| SRR7518324 | 2878 | Zhu2018rna | NET-seq | ligation | experimental | False | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR6661081 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR6661082 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR6661083 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR6661084 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR6661086 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR6661087 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR6661088 | A. thaliana | tissue | seedling | Col-0 | |||
| SRZ6661079 | A. thaliana | tissue | seedling | Col-0 | |||
| SRZ6661080 | A. thaliana | tissue | seedling | Col-0 | |||
| SRZ6661085 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518307 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518308 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518309 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518310 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518311 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518312 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518313 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518314 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518315 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518316 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518317 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518318 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518319 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518320 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518321 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518322 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518323 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR7518324 | A. thaliana | tissue | seedling | Col-0 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR6661081 | no treatment | None | None | None | |
| SRR6661082 | no treatment | None | None | None | |
| SRR6661083 | no treatment | None | None | None | |
| SRR6661084 | no treatment | None | None | None | |
| SRR6661086 | no treatment | None | None | None | |
| SRR6661087 | no treatment | None | None | None | |
| SRR6661088 | no treatment | None | None | None | |
| SRZ6661079 | no treatment | None | None | None | |
| SRZ6661080 | no treatment | None | None | None | |
| SRZ6661085 | no treatment | None | None | None | |
| SRR7518307 | no treatment | None | None | None | |
| SRR7518308 | no treatment | None | None | None | |
| SRR7518309 | no treatment | None | None | None | |
| SRR7518310 | no treatment | None | None | None | |
| SRR7518311 | no treatment | None | None | None | |
| SRR7518312 | no treatment | None | None | None | |
| SRR7518313 | vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| SRR7518314 | vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| SRR7518315 | treatment | flavopiridol (200 microM) | -1 hr | 0 hr | 1 hr |
| SRR7518316 | treatment | flavopiridol (200 microM) | -1 hr | 0 hr | 1 hr |
| SRR7518317 | vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| SRR7518318 | vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| SRR7518319 | treatment | flavopiridol (200 microM) | -1 hr | 0 hr | 1 hr |
| SRR7518320 | treatment | flavopiridol (200 microM) | -1 hr | 0 hr | 1 hr |
| SRR7518321 | vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| SRR7518322 | vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| SRR7518323 | treatment | flavopiridol (200 microM) | -1 hr | 0 hr | 1 hr |
| SRR7518324 | treatment | flavopiridol (200 microM) | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR6661081 | None | None | None | None | None | None | 0 | 0 |
| SRR6661082 | None | None | None | None | None | None | 0 | 0 |
| SRR6661083 | None | None | None | None | None | None | 0 | 0 |
| SRR6661084 | None | None | None | None | None | None | 0 | 0 |
| SRR6661086 | None | None | None | None | None | None | 0 | 0 |
| SRR6661087 | None | None | None | None | None | None | 0 | 0 |
| SRR6661088 | None | None | None | None | None | None | 0 | 0 |
| SRZ6661079 | 41 | 186,028,631 | 0.97069 | 0.5878 | 1.34454 | 0.12913 | 5 | 1 |
| SRZ6661080 | 41 | 295,395,303 | 0.95554 | 0.5902 | 1.08482 | 0.19886 | 5 | 1 |
| SRZ6661085 | None | None | None | None | None | None | 0 | 0 |
| SRR7518307 | 41 | 35,772,123 | 0.79972 | 0.6102 | 1.10255 | 0.25394 | 3 | 1 |
| SRR7518308 | 41 | 36,525,189 | 0.80467 | 0.6041 | 1.09367 | 0.24591 | 4 | 1 |
| SRR7518309 | 41 | 37,797,060 | 0.78171 | 0.5651 | 0.94773 | 0.27485 | 3 | 1 |
| SRR7518310 | 41 | 34,407,780 | 0.77268 | 0.5866 | 0.85869 | 0.28856 | 3 | 1 |
| SRR7518311 | 41 | 33,219,425 | 0.7989 | 0.5487 | 0.94969 | 0.24115 | 3 | 1 |
| SRR7518312 | 41 | 35,989,200 | 0.7225 | 0.5718 | 0.86802 | 0.34606 | 3 | 1 |
| SRR7518313 | 91 | 20,220,749 | 0.72078 | 0.2471 | 1.96575 | 0.21541 | 4 | 1 |
| SRR7518314 | 91 | 22,388,340 | 0.74413 | 0.2954 | 1.77404 | 0.20742 | 4 | 1 |
| SRR7518315 | 91 | 19,625,075 | 0.88096 | 0.3923 | 0.73548 | 0.09344 | 4 | 1 |
| SRR7518316 | 91 | 16,714,211 | 0.88628 | 0.4133 | 0.69977 | 0.08383 | 4 | 1 |
| SRR7518317 | 91 | 34,677,588 | 0.75367 | 0.3413 | 1.65027 | 0.24123 | 3 | 1 |
| SRR7518318 | 91 | 27,849,213 | 0.74103 | 0.323 | 1.50134 | 0.24031 | 3 | 1 |
| SRR7518319 | 91 | 33,192,254 | 0.90124 | 0.3341 | 1.47779 | 0.06976 | 4 | 1 |
| SRR7518320 | 91 | 25,373,707 | 0.86622 | 0.3958 | 1.01506 | 0.114 | 4 | 1 |
| SRR7518321 | 91 | 32,494,614 | 0.78677 | 0.3655 | 0.89248 | 0.20502 | 3 | 1 |
| SRR7518322 | 91 | 33,265,047 | 0.77217 | 0.3844 | 0.95218 | 0.21318 | 3 | 1 |
| SRR7518323 | 91 | 41,872,610 | 0.91797 | 0.4595 | 0.60846 | 0.07088 | 4 | 1 |
| SRR7518324 | 91 | 26,812,764 | 0.91591 | 0.4807 | 0.67074 | 0.06378 | 4 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR6661081 | None | None | None | None | None | None | None | None |
| SRR6661082 | None | None | None | None | None | None | None | None |
| SRR6661083 | None | None | None | None | None | None | None | None |
| SRR6661084 | None | None | None | None | None | None | None | None |
| SRR6661086 | None | None | None | None | None | None | None | None |
| SRR6661087 | None | None | None | None | None | None | None | None |
| SRR6661088 | None | None | None | None | None | None | None | None |
| SRZ6661079 | None | None | None | None | None | None | None | None |
| SRZ6661080 | None | None | None | None | None | None | None | None |
| SRZ6661085 | None | None | None | None | None | None | None | None |
| SRR7518307 | None | None | None | None | None | None | None | None |
| SRR7518308 | None | None | None | None | None | None | None | None |
| SRR7518309 | None | None | None | None | None | None | None | None |
| SRR7518310 | None | None | None | None | None | None | None | None |
| SRR7518311 | None | None | None | None | None | None | None | None |
| SRR7518312 | None | None | None | None | None | None | None | None |
| SRR7518313 | None | None | None | None | None | None | None | None |
| SRR7518314 | None | None | None | None | None | None | None | None |
| SRR7518315 | None | None | None | None | None | None | None | None |
| SRR7518316 | None | None | None | None | None | None | None | None |
| SRR7518317 | None | None | None | None | None | None | None | None |
| SRR7518318 | None | None | None | None | None | None | None | None |
| SRR7518319 | None | None | None | None | None | None | None | None |
| SRR7518320 | None | None | None | None | None | None | None | None |
| SRR7518321 | None | None | None | None | None | None | None | None |
| SRR7518322 | None | None | None | None | None | None | None | None |
| SRR7518323 | None | None | None | None | None | None | None | None |
| SRR7518324 | None | None | None | None | None | None | None | None |
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