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Dai2020loop
| SRR11936615 |
| SRR11936616 |
| SRR11936617 |
| SRR11936618 |
| SRR11936619 |
| SRR11936620 |
| SRR11936621 |
| SRR11936622 |
| SRR11936623 |
| SRR11936624 |
| SRR11936625 |
| SRR11936626 |
| SRR11936627 |
| SRR11936628 |
| TDFs (visualization files) | Zip archive | 1.8 Gb |
| Read counts and bidirectional calls | Zip archive | 101 Mb |
| SRP accession | SRP266165 |
| GEO accession | GSE151907 |
| Protocol | GRO-seq |
| Organisms | M. musculus |
| Library Prep | ligation |
| Spike-in | |
| Published | Yes |
| Year | 2020 |
| First Author | Dai |
| Last Author | Alt |
| DOI | 10.1038/s41586-020-03121-7 |
| Full citation | Hai-Qiang Dai, Hongli Hu, Jiangman Lou, Adam Yongxin Ye, Zhaoqing Ba, Xuefei Zhang, Yiwen Zhang, Lijuan Zhao, Hye Suk Yoon, Aimee M. Chapdelaine-Williams, Nia Kyritsis, Huan Chen, Kerstin Johnson, Sherry Lin, Andrea Conte, Rafael Casellas, Cheng-Sheng Lee, and Frederick W. Alt. Loop extrusion mediates physiological Igh locus contraction for RAG scanning. Nature, 590, 338-343, Jan 2021. |
|
Median QC score
|
1.0 |
| ATAC-seq? | No |
| RNA-seq? | No |
| ChIP-seq? | Yes |
| 3D Seq? | Yes |
| Other Seq? | Yes |