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Johnston2020nascent
| SRR11059463 |
| SRR11059464 |
| SRR11059465 |
| SRR11059466 |
| SRR11059467 |
| SRR11059468 |
| SRR11059469 |
| SRR11059470 |
| TDFs (visualization files) | Zip archive | 701 Mb |
| Read counts and bidirectional calls | Zip archive | 74 Mb |
| SRP accession | SRP248057 |
| GEO accession | GSE145071 |
| Protocol | PRO-seq |
| Organisms | H. sapiens |
| Library Prep | ligation |
| Spike-in | |
| Published | Yes |
| Year | 2020 |
| First Author | Johnston |
| Last Author | Hiebert |
| DOI | 10.1016/j.gene.2020.144758 |
| Full citation | Gretchen Johnston, Haley E. Ramsey, Qi Liu, Jing Wang, Kristy R. Stengel, Shilpa Sampathi, Pankaj Acharya, Maria Arrate, Matthew C. Stubbs, Timothy Burn, Michael R. Savona, and Scott W. Hiebert. Nascent transcript and single-cell RNA-seq analysis defines the mechanism of action of the LSD1 inhibitor INCB059872 in myeloid leukemia. Gene, 752:144758, Aug 2020. |
|
Median QC score
|
2.0 |
| ATAC-seq? | No |
| RNA-seq? | Yes |
| ChIP-seq? | Yes |
| 3D Seq? | No |
| Other Seq? | Yes |