DBNascent | Datasets

Zhang2019arerg

**Samples in dataset (Table view)**
SRR1168364
SRR1168365

**Downloads (all samples in dataset)**
TDFs (visualization files)	Zip archive	174 Mb
Read counts and bidirectional calls	Zip archive	17 Mb

**Paper Details**
SRP accession	SRP037734
GEO accession	GSE54946
Protocol	GRO-seq
Organisms	H. sapiens
Library Prep	ligation
Spike-in
Published	Yes
Year	2019
First Author	Zhang
Last Author	Cheung
DOI	10.1101/gr.230243.117
Full citation	Zhizhuo Zhang, Kern Rei Chng, Shreyas Lingadahalli, Zikai Chen, Mei Hui Liu, Huy Hoang Do, Shaojiang Cai, Nicola Rinaldi, Huay Mei Poh, Guoliang Li, Ying Ying Sung, Charlie L. Heng, Leighton J. Core, Si Kee Tan, Xiaoan Ruan, John T. Lis, Manolis Kellis, Yijun Ruan, Wing-Kin Sung, and Edwin Cheung. An ARERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells. Genome Research, 29(2):223-235, 2019
Median QC score	2.0
ATAC-seq?	No
RNA-seq?	Yes
ChIP-seq?	No
3D Seq?	Yes
Other Seq?	No