DBNascent | Samples

SRR7824015,SRR7824016,SRR7824017,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR7824015	39	Alexander2019imprinted	PRO-seq	ligation	control	True	2	1
SRR7824016	40	Alexander2019imprinted	PRO-seq	ligation	control	True	3	2
SRR7824017	41	Alexander2019imprinted	PRO-seq	ligation	control	True	2	1
SRR7824018	42	Alexander2019imprinted	PRO-seq	ligation	control	True	2	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR7824015	M. musculus	tissue	liver		C57BL/6(f) x (C57BL/6 x CAST/EiJ)(m)
SRR7824016	M. musculus	tissue	liver		C57BL/6(f) x (C57BL/6 x CAST/EiJ)(m)
SRR7824017	M. musculus	tissue	yolk sac		C57BL/6(f) x (C57BL/6 x CAST/EiJ)(m)
SRR7824018	M. musculus	tissue	yolk sac		C57BL/6(f) x (C57BL/6 x CAST/EiJ)(m)

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR7824015	no treatment		None	None	None
SRR7824016	no treatment		None	None	None
SRR7824017	no treatment		None	None	None
SRR7824018	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR7824015	151	147,674,525	0.61233	0.4823	3.65482	0.72244	2	2
SRR7824016	151	134,508,128	0.70196	0.3865	4.72471	0.63258	3	2
SRR7824017	151	143,979,729	0.61136	0.4337	6.10839	0.66767	2	3
SRR7824018	151	59,025,242	0.54522	0.5113	7.03996	0.605	2	4

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR7824015	33872	11791	11511	8187	30983	8088	13934	6306
SRR7824016	26971	10596	9244	4874	25113	8049	10218	4362
SRR7824017	49630	14176	16578	15935	50767	8814	22565	14961
SRR7824018	51471	14550	19278	14649	44822	9320	19214	12543