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SRR2131018,SRR2132595,SRR2132598,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR2131018 | 43 | Alhusini2017genomewide | GRO-seq | random primed | control | False | 5 | 1 |
| SRR2132595 | 44 | Alhusini2017genomewide | GRO-seq | random primed | control | False | 5 | 2 |
| SRR2132598 | 45 | Alhusini2017genomewide | GRO-seq | random primed | control | False | 5 | 3 |
| SRR2132601 | 46 | Alhusini2017genomewide | GRO-seq | random primed | experimental | False | 4 | 1 |
| SRR2132603 | 47 | Alhusini2017genomewide | GRO-seq | random primed | experimental | False | 5 | 2 |
| SRR2132604 | 48 | Alhusini2017genomewide | GRO-seq | random primed | experimental | False | 4 | 3 |
| SRR2132612 | 49 | Alhusini2017genomewide | GRO-seq | random primed | control | True | 4 | 1 |
| SRR2132613 | 50 | Alhusini2017genomewide | GRO-seq | random primed | experimental | False | 4 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR2131018 | S. cerevisiae | organism | whole yeast | clp1-769-5 | temperature-dependent Clp1 mut | ||
| SRR2132595 | S. cerevisiae | organism | whole yeast | clp1-769-5 | temperature-dependent Clp1 mut | ||
| SRR2132598 | S. cerevisiae | organism | whole yeast | clp1-769-5 | temperature-dependent Clp1 mut | ||
| SRR2132601 | S. cerevisiae | organism | whole yeast | clp1-769-5 | temperature-dependent Clp1 mut | ||
| SRR2132603 | S. cerevisiae | organism | whole yeast | clp1-769-5 | temperature-dependent Clp1 mut | ||
| SRR2132604 | S. cerevisiae | organism | whole yeast | clp1-769-5 | temperature-dependent Clp1 mut | ||
| SRR2132612 | S. cerevisiae | organism | whole yeast | BY4733 | |||
| SRR2132613 | S. cerevisiae | organism | whole yeast | BY4733 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR2131018 | treatment | permissive temperature (25 Celsius) | -2 hr | 0 hr | 2 hr |
| SRR2132595 | treatment | permissive temperature (25 Celsius) | -2 hr | 0 hr | 2 hr |
| SRR2132598 | treatment | permissive temperature (25 Celsius) | -2 hr | 0 hr | 2 hr |
| SRR2132601 | treatment | non-permissive temperature (37 Celsius) | -2 hr | 0 hr | 2 hr |
| SRR2132603 | treatment | non-permissive temperature (37 Celsius) | -2 hr | 0 hr | 2 hr |
| SRR2132604 | treatment | non-permissive temperature (37 Celsius) | -2 hr | 0 hr | 2 hr |
| SRR2132612 | treatment | permissive temperature (25 Celsius) | -2 hr | 0 hr | 2 hr |
| SRR2132613 | treatment | non-permissive temperature (37 Celsius) | -2 hr | 0 hr | 2 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR2131018 | 15 | 56,931,510 | 0.95095 | 0.8271 | 0.79415 | 0.09156 | 5 | 1 |
| SRR2132595 | 15 | 56,805,111 | 0.95321 | 0.836 | 0.7913 | 0.09255 | 5 | 1 |
| SRR2132598 | 15 | 141,861,169 | 0.95992 | 0.8891 | 0.60657 | 0.14623 | 5 | 1 |
| SRR2132601 | 15 | 34,736,563 | 0.94477 | 0.8175 | 2.56301 | 0.07462 | 4 | 1 |
| SRR2132603 | 15 | 51,615,864 | 0.96043 | 0.8156 | 2.80564 | 0.0689 | 5 | 1 |
| SRR2132604 | 15 | 119,927,459 | 0.94451 | 0.8791 | 0.70389 | 0.17673 | 4 | 1 |
| SRR2132612 | 15 | 25,549,288 | 0.89789 | 0.5696 | 0.77134 | 0.12069 | 4 | 1 |
| SRR2132613 | 15 | 30,652,115 | 0.87578 | 0.4146 | 0.3588 | 0.13389 | 4 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR2131018 | None | None | None | None | None | None | None | None |
| SRR2132595 | None | None | None | None | None | None | None | None |
| SRR2132598 | None | None | None | None | None | None | None | None |
| SRR2132601 | None | None | None | None | None | None | None | None |
| SRR2132603 | None | None | None | None | None | None | None | None |
| SRR2132604 | None | None | None | None | None | None | None | None |
| SRR2132612 | None | None | None | None | None | None | None | None |
| SRR2132613 | None | None | None | None | None | None | None | None |
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