DBNascent | Samples

SRR6246979,SRR6247018

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR6246979	536	Czimmerer2018transcription	GRO-seq	ligation	experimental	False	4	1
SRR6247018	537	Czimmerer2018transcription	GRO-seq	ligation	control	True	4	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR6246979	M. musculus	primary cell	bone marrow derived macrophage
SRR6247018	M. musculus	primary cell	bone marrow derived macrophage

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR6246979	treatment	interleukin-4 (20 ng/mL)	-1 hr	0 hr	1 hr
SRR6247018	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR6246979	37	35,810,180	0.88888	0.7314	2.33099	0.20185	4	1
SRR6247018	35	36,641,625	0.9405	0.7227	2.2317	0.12465	4	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR6246979	8329	3697	2719	616	7963	4405	1958	552
SRR6247018	4185	1852	1342	192	3984	2319	934	229