SRZ1810067,SRZ1810071
Downloads
Gene read counts Bidirectional read counts Tfit regions dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.
Technical details
Sample name Sample ID Paper identifier Protocol Library prep Control/Experimental Wildtype & Untreated QC score Replicate
SRZ1810067 576 Danko2015identification PRO-seq ligation control True 3 1
SRZ1810071 577 Danko2015identification PRO-seq ligation control True 2 1
Cellular details
Sample name Organism Sample type Cell type Clone/Individual Strain Genotype Construct
SRZ1810067 H. sapiens primary cell CD4+ T cell
SRZ1810071 H. sapiens cell line Jurkat T cell
Conditions
Sample name Condition type Treatment Start time End time Duration
SRZ1810067 vehicle DMSO/ethanol -30 min 0 min 30 min
SRZ1810071 vehicle DMSO/ethanol -30 min 0 min 30 min
Sample metrics
Sample name Raw read length Trim read depth Duplication proportion Proportion reads mapped Exon/intron ratio Unique read proportion Sample QC score Sample NRO score
SRZ1810067 50 86,475,834 0.68305 0.8287 3.9518 0.6225 3 2
SRZ1810071 50 58,256,679 0.53259 0.8418 3.43333 0.67072 2 2
Bidirectionals
Sample name Tfit total bidirs Tfit promoter bidirs Tfit intronic bidirs Tfit intergenic bidirs dREG total bidirs dREG promoter bidirs dREG intronic bidirs dREG intergenic bidirs
SRZ1810067 30490 12801 12694 5229 26680 8371 12275 5254
SRZ1810071 29921 11161 12647 6222 27975 9510 12078 6361
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