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SRZ1810067,SRZ1810071
Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
ZIP archive | ZIP archive | ZIP archive | ZIP archive |
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. |
Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
SRZ1810067 | 576 | Danko2015identification | PRO-seq | ligation | control | True | 3 | 1 |
SRZ1810071 | 577 | Danko2015identification | PRO-seq | ligation | control | True | 2 | 1 |
Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
SRZ1810067 | H. sapiens | primary cell | CD4+ T cell | ||||
SRZ1810071 | H. sapiens | cell line | Jurkat T cell |
Sample name | Condition type | Treatment | Start time | End time | Duration |
SRZ1810067 | vehicle | DMSO/ethanol | -30 min | 0 min | 30 min |
SRZ1810071 | vehicle | DMSO/ethanol | -30 min | 0 min | 30 min |
Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
SRZ1810067 | 50 | 86,475,834 | 0.68305 | 0.8287 | 3.9518 | 0.6225 | 3 | 2 |
SRZ1810071 | 50 | 58,256,679 | 0.53259 | 0.8418 | 3.43333 | 0.67072 | 2 | 2 |
Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
SRZ1810067 | 30490 | 12801 | 12694 | 5229 | 26680 | 8371 | 12275 | 5254 |
SRZ1810071 | 29921 | 11161 | 12647 | 6222 | 27975 | 9510 | 12078 | 6361 |