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Sample Details

SRR3146638,SRR3146639,SRR3146640,...
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Technical details
Sample name Sample ID Paper identifier Protocol Library prep Control/Experimental Wildtype & Untreated QC score Replicate
SRR3146638 611 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3146639 612 Duarte2016transcription PRO-seq ligation experimental False 3 2
SRR3146640 613 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3146641 614 Duarte2016transcription PRO-seq ligation experimental False 3 2
SRR3146642 615 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3146643 616 Duarte2016transcription PRO-seq ligation experimental False 3 2
SRR3146644 617 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3146645 618 Duarte2016transcription PRO-seq ligation experimental False 3 2
SRR3189196 619 Duarte2016transcription PRO-seq ligation control False 3 1
SRR3189197 620 Duarte2016transcription PRO-seq ligation control False 3 2
SRR3189198 621 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3189199 622 Duarte2016transcription PRO-seq ligation experimental False 3 2
SRR3189200 623 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3189201 624 Duarte2016transcription PRO-seq ligation experimental False 3 2
SRR3189202 625 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3189203 626 Duarte2016transcription PRO-seq ligation experimental False 3 2
SRR3189204 627 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3189205 628 Duarte2016transcription PRO-seq ligation experimental False 2 2
SRR3189206 629 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3189207 630 Duarte2016transcription PRO-seq ligation experimental False 3 2
SRR3189208 631 Duarte2016transcription PRO-seq ligation control True 3 1
SRR3189209 632 Duarte2016transcription PRO-seq ligation control True 3 2
SRR3189210 633 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3189211 634 Duarte2016transcription PRO-seq ligation experimental False 3 2
SRR3996482 635 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3996483 636 Duarte2016transcription PRO-seq ligation experimental False 3 2
SRR3996484 637 Duarte2016transcription PRO-seq ligation experimental False 3 1
SRR3996485 638 Duarte2016transcription PRO-seq ligation experimental False 3 2
SRR3996486 639 Duarte2016transcription PRO-seq ligation control False 3 3
SRR3996487 640 Duarte2016transcription PRO-seq ligation control False 3 4
SRR3996488 641 Duarte2016transcription PRO-seq ligation experimental False 3 3
SRR3996489 642 Duarte2016transcription PRO-seq ligation experimental False 3 4
Cellular details
Sample name Organism Sample type Cell type Clone/Individual Strain Genotype Construct
SRR3146638 D. melanogaster cell line S2
SRR3146639 D. melanogaster cell line S2
SRR3146640 D. melanogaster cell line S2
SRR3146641 D. melanogaster cell line S2
SRR3146642 D. melanogaster cell line S2
SRR3146643 D. melanogaster cell line S2
SRR3146644 D. melanogaster cell line S2
SRR3146645 D. melanogaster cell line S2
SRR3189196 D. melanogaster cell line S2
SRR3189197 D. melanogaster cell line S2
SRR3189198 D. melanogaster cell line S2
SRR3189199 D. melanogaster cell line S2
SRR3189200 D. melanogaster cell line S2
SRR3189201 D. melanogaster cell line S2
SRR3189202 D. melanogaster cell line S2
SRR3189203 D. melanogaster cell line S2
SRR3189204 D. melanogaster cell line S2
SRR3189205 D. melanogaster cell line S2
SRR3189206 D. melanogaster cell line S2
SRR3189207 D. melanogaster cell line S2
SRR3189208 D. melanogaster cell line S2
SRR3189209 D. melanogaster cell line S2
SRR3189210 D. melanogaster cell line S2
SRR3189211 D. melanogaster cell line S2
SRR3996482 D. melanogaster cell line S2
SRR3996483 D. melanogaster cell line S2
SRR3996484 D. melanogaster cell line S2
SRR3996485 D. melanogaster cell line S2
SRR3996486 D. melanogaster cell line S2
SRR3996487 D. melanogaster cell line S2
SRR3996488 D. melanogaster cell line S2
SRR3996489 D. melanogaster cell line S2
Conditions
Sample name Condition type Treatment Start time End time Duration
SRR3146638 treatment heat shock (initially 48 Celsius) -2 min 0 min 2 min
SRR3146639 treatment heat shock (initially 48 Celsius) -2 min 0 min 2 min
SRR3146640 treatment heat shock (initially 48 Celsius) -5 min 0 min 5 min
SRR3146641 treatment heat shock (initially 48 Celsius) -5 min 0 min 5 min
SRR3146642 treatment heat shock (initially 48 Celsius) -10 min 0 min 10 min
SRR3146643 treatment heat shock (initially 48 Celsius) -10 min 0 min 10 min
SRR3146644 treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
SRR3146645 treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
SRR3189196 treatment dsRNA LacZ (10 microg/mL) -5 day 0 day 5 day
SRR3189197 treatment dsRNA LacZ (10 microg/mL) -5 day 0 day 5 day
SRR3189198 treatment dsRNA LacZ (10 microg/mL) -5 day 0 day 5 day
treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
SRR3189199 treatment dsRNA LacZ (10 microg/mL) -5 day 0 day 5 day
treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
SRR3189200 treatment dsRNA Gaf (10 microg/mL) -5 day 0 day 5 day
SRR3189201 treatment dsRNA Gaf (10 microg/mL) -5 day 0 day 5 day
SRR3189202 treatment dsRNA Gaf (10 microg/mL) -5 day 0 day 5 day
treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
SRR3189203 treatment dsRNA Gaf (10 microg/mL) -5 day 0 day 5 day
treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
SRR3189204 treatment dsRNA Hsf (10 microg/mL) -5 day 0 day 5 day
SRR3189205 treatment dsRNA Hsf (10 microg/mL) -5 day 0 day 5 day
SRR3189206 treatment dsRNA Hsf (10 microg/mL) -5 day 0 day 5 day
treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
SRR3189207 treatment dsRNA Hsf (10 microg/mL) -5 day 0 day 5 day
treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
SRR3189208 no treatment None None None
SRR3189209 no treatment None None None
SRR3189210 treatment heat shock (initially 48 Celsius) -30 s 0 s 30 s
SRR3189211 treatment heat shock (initially 48 Celsius) -30 s 0 s 30 s
SRR3996482 treatment dsRNA M1bp (10 microg/mL) -5 day 0 day 5 day
SRR3996483 treatment dsRNA M1bp (10 microg/mL) -5 day 0 day 5 day
SRR3996484 treatment dsRNA M1bp (10 microg/mL) -5 day 0 day 5 day
treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
SRR3996485 treatment dsRNA M1bp (10 microg/mL) -5 day 0 day 5 day
treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
SRR3996486 treatment dsRNA LacZ (10 microg/mL) -5 day 0 day 5 day
SRR3996487 treatment dsRNA LacZ (10 microg/mL) -5 day 0 day 5 day
SRR3996488 treatment dsRNA LacZ (10 microg/mL) -5 day 0 day 5 day
treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
SRR3996489 treatment dsRNA LacZ (10 microg/mL) -5 day 0 day 5 day
treatment heat shock (initially 48 Celsius) -20 min 0 min 20 min
Sample metrics
Sample name Raw read length Trim read depth Duplication proportion Proportion reads mapped Exon/intron ratio Unique read proportion Sample QC score Sample NRO score
SRR3146638 50 21,028,193 0.73723 0.5881 2.88173 0.26981 3 1
SRR3146639 50 37,126,258 0.71975 0.6209 2.91486 0.36095 3 1
SRR3146640 50 20,398,602 0.7299 0.5599 3.00095 0.26899 3 2
SRR3146641 50 38,146,645 0.7848 0.6661 3.38795 0.27344 3 2
SRR3146642 50 24,429,672 0.72912 0.4795 3.45899 0.27042 3 2
SRR3146643 50 23,889,570 0.67458 0.5885 2.77999 0.35366 3 1
SRR3146644 50 33,459,314 0.72342 0.5703 3.22657 0.33173 3 2
SRR3146645 50 22,943,049 0.73494 0.5108 3.73304 0.26547 3 2
SRR3189196 51 18,499,887 0.6685 0.753 3.49716 0.34442 3 2
SRR3189197 51 35,844,317 0.73319 0.7624 3.13453 0.3362 3 2
SRR3189198 51 30,889,749 0.73322 0.6766 4.41735 0.30771 3 2
SRR3189199 51 34,829,711 0.77475 0.7005 3.83316 0.27304 3 2
SRR3189200 51 24,211,892 0.70452 0.7581 3.69346 0.33321 3 2
SRR3189201 51 22,219,322 0.67521 0.7641 3.23278 0.35803 3 2
SRR3189202 51 25,712,382 0.75408 0.6959 3.93764 0.27591 3 2
SRR3189203 51 17,765,534 0.72785 0.6944 3.59417 0.27482 3 2
SRR3189204 51 23,948,238 0.70031 0.7378 3.25373 0.33409 3 2
SRR3189205 51 16,088,173 0.62241 0.7518 3.7488 0.37773 2 2
SRR3189206 51 16,502,814 0.70676 0.67 2.54377 0.28734 3 1
SRR3189207 51 27,482,663 0.74361 0.7081 2.29045 0.29258 3 1
SRR3189208 50 23,871,068 0.7298 0.5024 2.88958 0.26971 3 1
SRR3189209 50 29,792,517 0.75916 0.5968 3.44265 0.28 3 2
SRR3189210 50 24,599,340 0.73144 0.5553 2.7398 0.28429 3 1
SRR3189211 50 30,422,904 0.761 0.6475 3.91502 0.28966 3 2
SRR3996482 76 32,117,385 0.72052 0.7581 2.64969 0.34402 3 1
SRR3996483 76 37,110,678 0.72238 0.623 2.53397 0.3358 3 1
SRR3996484 76 20,141,633 0.65387 0.7443 2.35229 0.38075 3 1
SRR3996485 76 19,567,235 0.63751 0.5458 2.49205 0.37496 3 1
SRR3996486 76 30,418,060 0.70695 0.7863 2.55243 0.35143 3 1
SRR3996487 76 56,267,833 0.74895 0.7429 2.57975 0.353 3 1
SRR3996488 76 22,826,278 0.70216 0.7532 2.39365 0.34032 3 1
SRR3996489 76 23,799,563 0.68869 0.69 2.4957 0.34546 3 1
Bidirectionals
Sample name Tfit total bidirs Tfit promoter bidirs Tfit intronic bidirs Tfit intergenic bidirs dREG total bidirs dREG promoter bidirs dREG intronic bidirs dREG intergenic bidirs
SRR3146638 None None None None None None None None
SRR3146639 None None None None None None None None
SRR3146640 None None None None None None None None
SRR3146641 None None None None None None None None
SRR3146642 None None None None None None None None
SRR3146643 None None None None None None None None
SRR3146644 None None None None None None None None
SRR3146645 None None None None None None None None
SRR3189196 None None None None None None None None
SRR3189197 None None None None None None None None
SRR3189198 None None None None None None None None
SRR3189199 None None None None None None None None
SRR3189200 None None None None None None None None
SRR3189201 None None None None None None None None
SRR3189202 None None None None None None None None
SRR3189203 None None None None None None None None
SRR3189204 None None None None None None None None
SRR3189205 None None None None None None None None
SRR3189206 None None None None None None None None
SRR3189207 None None None None None None None None
SRR3189208 None None None None None None None None
SRR3189209 None None None None None None None None
SRR3189210 None None None None None None None None
SRR3189211 None None None None None None None None
SRR3996482 None None None None None None None None
SRR3996483 None None None None None None None None
SRR3996484 None None None None None None None None
SRR3996485 None None None None None None None None
SRR3996486 None None None None None None None None
SRR3996487 None None None None None None None None
SRR3996488 None None None None None None None None
SRR3996489 None None None None None None None None
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