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SRR3146638,SRR3146639,SRR3146640,...
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| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR3146638 | 611 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3146639 | 612 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR3146640 | 613 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3146641 | 614 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR3146642 | 615 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3146643 | 616 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR3146644 | 617 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3146645 | 618 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR3189196 | 619 | Duarte2016transcription | PRO-seq | ligation | control | False | 3 | 1 |
| SRR3189197 | 620 | Duarte2016transcription | PRO-seq | ligation | control | False | 3 | 2 |
| SRR3189198 | 621 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3189199 | 622 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR3189200 | 623 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3189201 | 624 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR3189202 | 625 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3189203 | 626 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR3189204 | 627 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3189205 | 628 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 2 | 2 |
| SRR3189206 | 629 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3189207 | 630 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR3189208 | 631 | Duarte2016transcription | PRO-seq | ligation | control | True | 3 | 1 |
| SRR3189209 | 632 | Duarte2016transcription | PRO-seq | ligation | control | True | 3 | 2 |
| SRR3189210 | 633 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3189211 | 634 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR3996482 | 635 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3996483 | 636 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR3996484 | 637 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR3996485 | 638 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR3996486 | 639 | Duarte2016transcription | PRO-seq | ligation | control | False | 3 | 3 |
| SRR3996487 | 640 | Duarte2016transcription | PRO-seq | ligation | control | False | 3 | 4 |
| SRR3996488 | 641 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 3 |
| SRR3996489 | 642 | Duarte2016transcription | PRO-seq | ligation | experimental | False | 3 | 4 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR3146638 | D. melanogaster | cell line | S2 | ||||
| SRR3146639 | D. melanogaster | cell line | S2 | ||||
| SRR3146640 | D. melanogaster | cell line | S2 | ||||
| SRR3146641 | D. melanogaster | cell line | S2 | ||||
| SRR3146642 | D. melanogaster | cell line | S2 | ||||
| SRR3146643 | D. melanogaster | cell line | S2 | ||||
| SRR3146644 | D. melanogaster | cell line | S2 | ||||
| SRR3146645 | D. melanogaster | cell line | S2 | ||||
| SRR3189196 | D. melanogaster | cell line | S2 | ||||
| SRR3189197 | D. melanogaster | cell line | S2 | ||||
| SRR3189198 | D. melanogaster | cell line | S2 | ||||
| SRR3189199 | D. melanogaster | cell line | S2 | ||||
| SRR3189200 | D. melanogaster | cell line | S2 | ||||
| SRR3189201 | D. melanogaster | cell line | S2 | ||||
| SRR3189202 | D. melanogaster | cell line | S2 | ||||
| SRR3189203 | D. melanogaster | cell line | S2 | ||||
| SRR3189204 | D. melanogaster | cell line | S2 | ||||
| SRR3189205 | D. melanogaster | cell line | S2 | ||||
| SRR3189206 | D. melanogaster | cell line | S2 | ||||
| SRR3189207 | D. melanogaster | cell line | S2 | ||||
| SRR3189208 | D. melanogaster | cell line | S2 | ||||
| SRR3189209 | D. melanogaster | cell line | S2 | ||||
| SRR3189210 | D. melanogaster | cell line | S2 | ||||
| SRR3189211 | D. melanogaster | cell line | S2 | ||||
| SRR3996482 | D. melanogaster | cell line | S2 | ||||
| SRR3996483 | D. melanogaster | cell line | S2 | ||||
| SRR3996484 | D. melanogaster | cell line | S2 | ||||
| SRR3996485 | D. melanogaster | cell line | S2 | ||||
| SRR3996486 | D. melanogaster | cell line | S2 | ||||
| SRR3996487 | D. melanogaster | cell line | S2 | ||||
| SRR3996488 | D. melanogaster | cell line | S2 | ||||
| SRR3996489 | D. melanogaster | cell line | S2 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR3146638 | treatment | heat shock (initially 48 Celsius) | -2 min | 0 min | 2 min |
| SRR3146639 | treatment | heat shock (initially 48 Celsius) | -2 min | 0 min | 2 min |
| SRR3146640 | treatment | heat shock (initially 48 Celsius) | -5 min | 0 min | 5 min |
| SRR3146641 | treatment | heat shock (initially 48 Celsius) | -5 min | 0 min | 5 min |
| SRR3146642 | treatment | heat shock (initially 48 Celsius) | -10 min | 0 min | 10 min |
| SRR3146643 | treatment | heat shock (initially 48 Celsius) | -10 min | 0 min | 10 min |
| SRR3146644 | treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min |
| SRR3146645 | treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min |
| SRR3189196 | treatment | dsRNA LacZ (10 microg/mL) | -5 day | 0 day | 5 day |
| SRR3189197 | treatment | dsRNA LacZ (10 microg/mL) | -5 day | 0 day | 5 day |
| SRR3189198 | treatment | dsRNA LacZ (10 microg/mL) | -5 day | 0 day | 5 day |
| treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min | |
| SRR3189199 | treatment | dsRNA LacZ (10 microg/mL) | -5 day | 0 day | 5 day |
| treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min | |
| SRR3189200 | treatment | dsRNA Gaf (10 microg/mL) | -5 day | 0 day | 5 day |
| SRR3189201 | treatment | dsRNA Gaf (10 microg/mL) | -5 day | 0 day | 5 day |
| SRR3189202 | treatment | dsRNA Gaf (10 microg/mL) | -5 day | 0 day | 5 day |
| treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min | |
| SRR3189203 | treatment | dsRNA Gaf (10 microg/mL) | -5 day | 0 day | 5 day |
| treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min | |
| SRR3189204 | treatment | dsRNA Hsf (10 microg/mL) | -5 day | 0 day | 5 day |
| SRR3189205 | treatment | dsRNA Hsf (10 microg/mL) | -5 day | 0 day | 5 day |
| SRR3189206 | treatment | dsRNA Hsf (10 microg/mL) | -5 day | 0 day | 5 day |
| treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min | |
| SRR3189207 | treatment | dsRNA Hsf (10 microg/mL) | -5 day | 0 day | 5 day |
| treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min | |
| SRR3189208 | no treatment | None | None | None | |
| SRR3189209 | no treatment | None | None | None | |
| SRR3189210 | treatment | heat shock (initially 48 Celsius) | -30 s | 0 s | 30 s |
| SRR3189211 | treatment | heat shock (initially 48 Celsius) | -30 s | 0 s | 30 s |
| SRR3996482 | treatment | dsRNA M1bp (10 microg/mL) | -5 day | 0 day | 5 day |
| SRR3996483 | treatment | dsRNA M1bp (10 microg/mL) | -5 day | 0 day | 5 day |
| SRR3996484 | treatment | dsRNA M1bp (10 microg/mL) | -5 day | 0 day | 5 day |
| treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min | |
| SRR3996485 | treatment | dsRNA M1bp (10 microg/mL) | -5 day | 0 day | 5 day |
| treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min | |
| SRR3996486 | treatment | dsRNA LacZ (10 microg/mL) | -5 day | 0 day | 5 day |
| SRR3996487 | treatment | dsRNA LacZ (10 microg/mL) | -5 day | 0 day | 5 day |
| SRR3996488 | treatment | dsRNA LacZ (10 microg/mL) | -5 day | 0 day | 5 day |
| treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min | |
| SRR3996489 | treatment | dsRNA LacZ (10 microg/mL) | -5 day | 0 day | 5 day |
| treatment | heat shock (initially 48 Celsius) | -20 min | 0 min | 20 min |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR3146638 | 50 | 21,028,193 | 0.73723 | 0.5881 | 2.88173 | 0.26981 | 3 | 1 |
| SRR3146639 | 50 | 37,126,258 | 0.71975 | 0.6209 | 2.91486 | 0.36095 | 3 | 1 |
| SRR3146640 | 50 | 20,398,602 | 0.7299 | 0.5599 | 3.00095 | 0.26899 | 3 | 2 |
| SRR3146641 | 50 | 38,146,645 | 0.7848 | 0.6661 | 3.38795 | 0.27344 | 3 | 2 |
| SRR3146642 | 50 | 24,429,672 | 0.72912 | 0.4795 | 3.45899 | 0.27042 | 3 | 2 |
| SRR3146643 | 50 | 23,889,570 | 0.67458 | 0.5885 | 2.77999 | 0.35366 | 3 | 1 |
| SRR3146644 | 50 | 33,459,314 | 0.72342 | 0.5703 | 3.22657 | 0.33173 | 3 | 2 |
| SRR3146645 | 50 | 22,943,049 | 0.73494 | 0.5108 | 3.73304 | 0.26547 | 3 | 2 |
| SRR3189196 | 51 | 18,499,887 | 0.6685 | 0.753 | 3.49716 | 0.34442 | 3 | 2 |
| SRR3189197 | 51 | 35,844,317 | 0.73319 | 0.7624 | 3.13453 | 0.3362 | 3 | 2 |
| SRR3189198 | 51 | 30,889,749 | 0.73322 | 0.6766 | 4.41735 | 0.30771 | 3 | 2 |
| SRR3189199 | 51 | 34,829,711 | 0.77475 | 0.7005 | 3.83316 | 0.27304 | 3 | 2 |
| SRR3189200 | 51 | 24,211,892 | 0.70452 | 0.7581 | 3.69346 | 0.33321 | 3 | 2 |
| SRR3189201 | 51 | 22,219,322 | 0.67521 | 0.7641 | 3.23278 | 0.35803 | 3 | 2 |
| SRR3189202 | 51 | 25,712,382 | 0.75408 | 0.6959 | 3.93764 | 0.27591 | 3 | 2 |
| SRR3189203 | 51 | 17,765,534 | 0.72785 | 0.6944 | 3.59417 | 0.27482 | 3 | 2 |
| SRR3189204 | 51 | 23,948,238 | 0.70031 | 0.7378 | 3.25373 | 0.33409 | 3 | 2 |
| SRR3189205 | 51 | 16,088,173 | 0.62241 | 0.7518 | 3.7488 | 0.37773 | 2 | 2 |
| SRR3189206 | 51 | 16,502,814 | 0.70676 | 0.67 | 2.54377 | 0.28734 | 3 | 1 |
| SRR3189207 | 51 | 27,482,663 | 0.74361 | 0.7081 | 2.29045 | 0.29258 | 3 | 1 |
| SRR3189208 | 50 | 23,871,068 | 0.7298 | 0.5024 | 2.88958 | 0.26971 | 3 | 1 |
| SRR3189209 | 50 | 29,792,517 | 0.75916 | 0.5968 | 3.44265 | 0.28 | 3 | 2 |
| SRR3189210 | 50 | 24,599,340 | 0.73144 | 0.5553 | 2.7398 | 0.28429 | 3 | 1 |
| SRR3189211 | 50 | 30,422,904 | 0.761 | 0.6475 | 3.91502 | 0.28966 | 3 | 2 |
| SRR3996482 | 76 | 32,117,385 | 0.72052 | 0.7581 | 2.64969 | 0.34402 | 3 | 1 |
| SRR3996483 | 76 | 37,110,678 | 0.72238 | 0.623 | 2.53397 | 0.3358 | 3 | 1 |
| SRR3996484 | 76 | 20,141,633 | 0.65387 | 0.7443 | 2.35229 | 0.38075 | 3 | 1 |
| SRR3996485 | 76 | 19,567,235 | 0.63751 | 0.5458 | 2.49205 | 0.37496 | 3 | 1 |
| SRR3996486 | 76 | 30,418,060 | 0.70695 | 0.7863 | 2.55243 | 0.35143 | 3 | 1 |
| SRR3996487 | 76 | 56,267,833 | 0.74895 | 0.7429 | 2.57975 | 0.353 | 3 | 1 |
| SRR3996488 | 76 | 22,826,278 | 0.70216 | 0.7532 | 2.39365 | 0.34032 | 3 | 1 |
| SRR3996489 | 76 | 23,799,563 | 0.68869 | 0.69 | 2.4957 | 0.34546 | 3 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR3146638 | None | None | None | None | None | None | None | None |
| SRR3146639 | None | None | None | None | None | None | None | None |
| SRR3146640 | None | None | None | None | None | None | None | None |
| SRR3146641 | None | None | None | None | None | None | None | None |
| SRR3146642 | None | None | None | None | None | None | None | None |
| SRR3146643 | None | None | None | None | None | None | None | None |
| SRR3146644 | None | None | None | None | None | None | None | None |
| SRR3146645 | None | None | None | None | None | None | None | None |
| SRR3189196 | None | None | None | None | None | None | None | None |
| SRR3189197 | None | None | None | None | None | None | None | None |
| SRR3189198 | None | None | None | None | None | None | None | None |
| SRR3189199 | None | None | None | None | None | None | None | None |
| SRR3189200 | None | None | None | None | None | None | None | None |
| SRR3189201 | None | None | None | None | None | None | None | None |
| SRR3189202 | None | None | None | None | None | None | None | None |
| SRR3189203 | None | None | None | None | None | None | None | None |
| SRR3189204 | None | None | None | None | None | None | None | None |
| SRR3189205 | None | None | None | None | None | None | None | None |
| SRR3189206 | None | None | None | None | None | None | None | None |
| SRR3189207 | None | None | None | None | None | None | None | None |
| SRR3189208 | None | None | None | None | None | None | None | None |
| SRR3189209 | None | None | None | None | None | None | None | None |
| SRR3189210 | None | None | None | None | None | None | None | None |
| SRR3189211 | None | None | None | None | None | None | None | None |
| SRR3996482 | None | None | None | None | None | None | None | None |
| SRR3996483 | None | None | None | None | None | None | None | None |
| SRR3996484 | None | None | None | None | None | None | None | None |
| SRR3996485 | None | None | None | None | None | None | None | None |
| SRR3996486 | None | None | None | None | None | None | None | None |
| SRR3996487 | None | None | None | None | None | None | None | None |
| SRR3996488 | None | None | None | None | None | None | None | None |
| SRR3996489 | None | None | None | None | None | None | None | None |
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