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SRR1916552,SRR1916553,SRR1916554,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1916552 | 661 | Elkon2015myc | GRO-seq | ligation | control | False | 3 | 1 |
| SRR1916553 | 662 | Elkon2015myc | GRO-seq | ligation | experimental | False | 3 | 1 |
| SRR1916554 | 663 | Elkon2015myc | GRO-seq | ligation | control | False | 3 | 2 |
| SRR1916555 | 664 | Elkon2015myc | GRO-seq | ligation | experimental | False | 3 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1916552 | H. sapiens | cell line | U2OS | dox-inducible Myc (stable) | |||
| SRR1916553 | H. sapiens | cell line | U2OS | dox-inducible Myc (stable) | |||
| SRR1916554 | H. sapiens | cell line | U2OS | dox-inducible Myc (stable) | |||
| SRR1916555 | H. sapiens | cell line | U2OS | dox-inducible Myc (stable) |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1916552 | vehicle | water | -5 hr | 0 hr | 5 hr |
| SRR1916553 | treatment | doxycycline | -5 hr | 0 hr | 5 hr |
| SRR1916554 | vehicle | water | -5 hr | 0 hr | 5 hr |
| SRR1916555 | treatment | doxycycline | -5 hr | 0 hr | 5 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1916552 | 51 | 111,751,547 | 0.77515 | 0.9553 | 1.65887 | 0.36975 | 3 | 1 |
| SRR1916553 | 51 | 121,279,332 | 0.74534 | 0.9546 | 1.75 | 0.4024 | 3 | 1 |
| SRR1916554 | 51 | 100,896,527 | 0.76731 | 0.9615 | 1.60399 | 0.37537 | 3 | 1 |
| SRR1916555 | 51 | 101,833,711 | 0.73551 | 0.9442 | 1.68894 | 0.39054 | 3 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1916552 | 43271 | 13276 | 18058 | 10905 | 30443 | 8610 | 11878 | 9461 |
| SRR1916553 | 46235 | 13627 | 19600 | 11745 | 33024 | 8431 | 13274 | 10610 |
| SRR1916554 | 45682 | 13700 | 19068 | 11859 | 31505 | 8674 | 12293 | 10011 |
| SRR1916555 | 42563 | 12547 | 18244 | 10484 | 29395 | 7929 | 11730 | 9081 |
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