DBNascent | Samples

SRR8235064,SRR8235065,SRR8235066,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR8235064	665	Elrod2019integrator	PRO-seq	ligation	control	False	3	1
SRR8235065	666	Elrod2019integrator	PRO-seq	ligation	control	False	2	2
SRR8235066	667	Elrod2019integrator	PRO-seq	ligation	control	False	3	3
SRR8235067	668	Elrod2019integrator	PRO-seq	ligation	experimental	False	3	1
SRR8235068	669	Elrod2019integrator	PRO-seq	ligation	experimental	False	3	2
SRR8235069	670	Elrod2019integrator	PRO-seq	ligation	experimental	False	2	3

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR8235064	D. melanogaster	cell line	DL1
SRR8235065	D. melanogaster	cell line	DL1
SRR8235066	D. melanogaster	cell line	DL1
SRR8235067	D. melanogaster	cell line	DL1
SRR8235068	D. melanogaster	cell line	DL1
SRR8235069	D. melanogaster	cell line	DL1

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR8235064	treatment	dsRNA beta-galactosidase (2 microg/1.5 million cells)	-60 hr	0 hr	60 hr
SRR8235065	treatment	dsRNA beta-galactosidase (2 microg/1.5 million cells)	-60 hr	0 hr	60 hr
SRR8235066	treatment	dsRNA beta-galactosidase (2 microg/1.5 million cells)	-60 hr	0 hr	60 hr
SRR8235067	treatment	dsRNA IntS9 (2 microg/1.5 million cells)	-60 hr	0 hr	60 hr
SRR8235068	treatment	dsRNA IntS9 (2 microg/1.5 million cells)	-60 hr	0 hr	60 hr
SRR8235069	treatment	dsRNA IntS9 (2 microg/1.5 million cells)	-60 hr	0 hr	60 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR8235064	42	15,672,196	0.3687	0.72	2.59568	0.42813	3	1
SRR8235065	42	19,937,531	0.39731	0.7221	2.61153	0.41949	2	1
SRR8235066	42	14,138,389	0.38358	0.7165	2.68869	0.40492	3	1
SRR8235067	42	14,772,842	0.36934	0.7396	2.68989	0.40558	3	1
SRR8235068	42	14,171,231	0.36668	0.7328	2.82493	0.40175	3	1
SRR8235069	42	17,456,904	0.39423	0.7156	2.88896	0.39488	2	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR8235064	None	None	None	None	None	None	None	None
SRR8235065	None	None	None	None	None	None	None	None
SRR8235066	None	None	None	None	None	None	None	None
SRR8235067	None	None	None	None	None	None	None	None
SRR8235068	None	None	None	None	None	None	None	None
SRR8235069	None	None	None	None	None	None	None	None