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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5633592	777	Fleischer2017dna	GRO-seq	circularization	control	True	4	1
SRR5633593	778	Fleischer2017dna	GRO-seq	circularization	control	True	4	2
SRR5633594	779	Fleischer2017dna	GRO-seq	circularization	experimental	False	3	1
SRR5633595	780	Fleischer2017dna	GRO-seq	circularization	experimental	False	3	2
SRR5633596	781	Fleischer2017dna	GRO-seq	circularization	experimental	False	4	1
SRR5633597	782	Fleischer2017dna	GRO-seq	circularization	experimental	False	3	2
SRR5633598	783	Fleischer2017dna	GRO-seq	circularization	experimental	False	4	1
SRR5633599	784	Fleischer2017dna	GRO-seq	circularization	experimental	False	3	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5633592	H. sapiens	cell line	MCF7
SRR5633593	H. sapiens	cell line	MCF7
SRR5633594	H. sapiens	cell line	MCF7
SRR5633595	H. sapiens	cell line	MCF7
SRR5633596	H. sapiens	cell line	MCF7
SRR5633597	H. sapiens	cell line	MCF7
SRR5633598	H. sapiens	cell line	MCF7
SRR5633599	H. sapiens	cell line	MCF7

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5633592	vehicle	ethanol	-40 min	0 min	40 min
SRR5633593	vehicle	ethanol	-40 min	0 min	40 min
SRR5633594	treatment	estradiol (100 nM)	-40 min	0 min	40 min
SRR5633595	treatment	estradiol (100 nM)	-40 min	0 min	40 min
SRR5633596	treatment	hydroxytamoxifen (1 microM)	-40 min	0 min	40 min
SRR5633597	treatment	hydroxytamoxifen (1 microM)	-40 min	0 min	40 min
SRR5633598	treatment	estradiol (100 nM)	-40 min	0 min	40 min
	treatment	hydroxytamoxifen (1 microM)	-40 min	0 min	40 min
SRR5633599	treatment	estradiol (100 nM)	-40 min	0 min	40 min
	treatment	hydroxytamoxifen (1 microM)	-40 min	0 min	40 min

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5633592	51	9,394,822	0.48162	0.8882	2.24189	0.4973	4	1
SRR5633593	51	8,528,767	0.46393	0.8542	2.05245	0.50478	4	1
SRR5633594	51	10,750,600	0.39828	0.8836	2.28117	0.60313	3	1
SRR5633595	51	11,236,731	0.42068	0.857	1.88542	0.5788	3	1
SRR5633596	51	7,372,470	0.69365	0.7879	1.13393	0.27142	4	1
SRR5633597	51	12,842,479	0.3621	0.8782	2.20729	0.64756	3	1
SRR5633598	51	6,165,557	0.38253	0.8594	2.01914	0.56972	4	1
SRR5633599	51	10,937,997	0.3078	0.8966	2.34447	0.69482	3	1

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5633592	15659	7379	5886	2254	11144	6868	3327	1322
SRR5633593	14990	7351	5652	2073	11212	7325	3249	1202
SRR5633594	19109	8716	7326	2914	12974	7557	4174	1598
SRR5633595	19261	8903	7442	2885	12626	7463	4042	1493
SRR5633596	9699	4833	3570	1388	8214	5656	2198	911
SRR5633597	22048	10487	8342	3441	15084	8326	5063	2049
SRR5633598	12965	6442	4751	1736	9251	6341	2515	890
SRR5633599	21075	9911	7991	3323	14561	8142	4896	1924