DBNascent | Samples

SRR2036963,SRR2036964,SRR2036965,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR2036963	785	Flynn20167skbaf	GRO-seq	circularization	experimental	False	1	1
SRR2036964	786	Flynn20167skbaf	GRO-seq	circularization	experimental	False	3	2
SRR2036965	787	Flynn20167skbaf	GRO-seq	circularization	control	False	5	1
SRR2036966	788	Flynn20167skbaf	GRO-seq	circularization	control	False	3	2
SRR2226207	789	Flynn20167skbaf	GRO-seq	circularization	experimental	False	2	3
SRR2226208	790	Flynn20167skbaf	GRO-seq	circularization	experimental	False	1	4
SRR2226209	791	Flynn20167skbaf	GRO-seq	circularization	control	False	2	3
SRR2226210	792	Flynn20167skbaf	GRO-seq	circularization	control	False	1	4

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR2036963	M. musculus	cell line	ESC	V6.5
SRR2036964	M. musculus	cell line	ESC	V6.5
SRR2036965	M. musculus	cell line	ESC	V6.5
SRR2036966	M. musculus	cell line	ESC	V6.5
SRR2226207	M. musculus	cell line	ESC	V6.5
SRR2226208	M. musculus	cell line	ESC	V6.5
SRR2226209	M. musculus	cell line	ESC	V6.5
SRR2226210	M. musculus	cell line	ESC	V6.5

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR2036963	treatment	7SK antisense oligonucleotide (1 nmole/2 million cells)	-12 hr	0 hr	12 hr
SRR2036964	treatment	7SK antisense oligonucleotide (1 nmole/2 million cells)	-12 hr	0 hr	12 hr
SRR2036965	treatment	control antisense oligonucleotide (1 nmole/2 million cells)	-12 hr	0 hr	12 hr
SRR2036966	treatment	control antisense oligonucleotide (1 nmole/2 million cells)	-12 hr	0 hr	12 hr
SRR2226207	treatment	7SK antisense oligonucleotide (1 nmole/2 million cells)	-12 hr	0 hr	12 hr
SRR2226208	treatment	7SK antisense oligonucleotide (1 nmole/2 million cells)	-12 hr	0 hr	12 hr
SRR2226209	treatment	control antisense oligonucleotide (1 nmole/2 million cells)	-12 hr	0 hr	12 hr
SRR2226210	treatment	control antisense oligonucleotide (1 nmole/2 million cells)	-12 hr	0 hr	12 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR2036963	41	44,107,188	0.46368	0.7542	2.96128	0.62106	1	1
SRR2036964	41	20,315,024	0.67614	0.5225	2.63568	0.33319	3	1
SRR2036965	41	65,229,033	0.96701	0.7279	30.7588	0.03718	5	5
SRR2036966	41	21,344,456	0.77659	0.5691	2.73128	0.25448	3	1
SRR2226207	31	77,186,504	0.5234	0.6182	2.49366	0.63549	2	2
SRR2226208	31	67,790,614	0.45576	0.6368	2.49613	0.66386	1	2
SRR2226209	31	70,019,380	0.50597	0.6107	2.55952	0.59795	2	1
SRR2226210	10	77,118,115	0.48592	0.6158	2.55013	0.62424	1	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR2036963	None	None	None	None	None	None	None	None
SRR2036964	12644	4411	3614	2921	8514	4182	1733	1879
SRR2036965	5852	2533	1531	793	4322	2587	707	576
SRR2036966	7450	2669	1987	1471	6730	3567	1279	1316
SRR2226207	38230	10492	11854	13019	33503	8100	11876	11837
SRR2226208	39193	10447	12164	13573	33342	8004	11778	11811
SRR2226209	31338	9664	9604	9787	32957	8031	11488	11317
SRR2226210	32373	9813	9743	10538	36101	8234	12684	12827