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SRR3309664,SRR3309665
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR3309664 | 961 | Hong2017dissociation | GRO-seq | circularization | control | False | 1 | 1 |
| SRR3309665 | 962 | Hong2017dissociation | GRO-seq | circularization | experimental | False | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR3309664 | M. musculus | tissue | quadriceps muscle | C57BL/6 | Hdac3 fl/fl | ||
| SRR3309665 | M. musculus | tissue | quadriceps muscle | C57BL/6 | Hdac3 fl/fl; Myl1-Cre |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR3309664 | no treatment | None | None | None | |
| SRR3309665 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR3309664 | 50 | 131,772,372 | 0.49634 | 0.5448 | 3.69164 | 0.65126 | 1 | 2 |
| SRR3309665 | 50 | 139,980,033 | 0.51889 | 0.6052 | 3.65336 | 0.6929 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR3309664 | 38500 | 14018 | 11637 | 10602 | 43640 | 9802 | 18938 | 12003 |
| SRR3309665 | 37782 | 13928 | 11141 | 10488 | 44656 | 9901 | 19715 | 12390 |
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