Explore DBNascent | browse or search sample metadata

Search

Advanced Search

All Samples

Samples By Dataset

Sample Details

SRR7413443,SRR7413428,SRR7413429,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR7413443	1000	Hou2019paf1c	PRO-seq	ligation	experimental	False	2	2
SRR7413428	985	Hou2019paf1c	PRO-seq	ligation	control	False	1	1
SRR7413429	986	Hou2019paf1c	PRO-seq	ligation	experimental	False	1	1
SRR7413430	987	Hou2019paf1c	PRO-seq	ligation	experimental	False	2	1
SRR7413431	988	Hou2019paf1c	PRO-seq	ligation	experimental	False	1	1
SRR7413432	989	Hou2019paf1c	PRO-seq	ligation	experimental	False	2	1
SRR7413433	990	Hou2019paf1c	PRO-seq	ligation	experimental	False	1	1
SRR7413434	991	Hou2019paf1c	PRO-seq	ligation	experimental	False	3	1
SRR7413435	992	Hou2019paf1c	PRO-seq	ligation	experimental	False	1	1
SRR7413436	993	Hou2019paf1c	PRO-seq	ligation	control	False	1	2
SRR7413437	994	Hou2019paf1c	PRO-seq	ligation	experimental	False	1	2
SRR7413438	995	Hou2019paf1c	PRO-seq	ligation	experimental	False	1	2
SRR7413439	996	Hou2019paf1c	PRO-seq	ligation	experimental	False	2	2
SRR7413440	997	Hou2019paf1c	PRO-seq	ligation	experimental	False	2	2
SRR7413441	998	Hou2019paf1c	PRO-seq	ligation	experimental	False	1	2
SRR7413442	999	Hou2019paf1c	PRO-seq	ligation	experimental	False	3	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR7413443	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413428	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413429	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413430	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413431	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413432	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413433	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413434	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413435	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413436	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413437	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413438	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413439	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413440	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413441	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)
SRR7413442	M. musculus	cell line	C2C12			Paf1 -/-; dox-inducible Paf1 exogenous (stable)

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR7413443	treatment	DRB (100 microM)	-30 min	0 min	30 min
	treatment	doxycycline withdrawal	-3 day	0 day	3 day
SRR7413428	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR7413429	treatment	doxycycline withdrawal	-3 day	0 day	3 day
SRR7413430	treatment	DRB (100 microM)	-5 min	0 min	5 min
	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR7413431	treatment	DRB (100 microM)	-5 min	0 min	5 min
	treatment	doxycycline withdrawal	-3 day	0 day	3 day
SRR7413432	treatment	DRB (100 microM)	-15 min	0 min	15 min
	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR7413433	treatment	DRB (100 microM)	-15 min	0 min	15 min
	treatment	doxycycline withdrawal	-3 day	0 day	3 day
SRR7413434	treatment	DRB (100 microM)	-30 min	0 min	30 min
	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR7413435	treatment	DRB (100 microM)	-30 min	0 min	30 min
	treatment	doxycycline withdrawal	-3 day	0 day	3 day
SRR7413436	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR7413437	treatment	doxycycline withdrawal	-3 day	0 day	3 day
SRR7413438	treatment	DRB (100 microM)	-5 min	0 min	5 min
	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR7413439	treatment	DRB (100 microM)	-5 min	0 min	5 min
	treatment	doxycycline withdrawal	-3 day	0 day	3 day
SRR7413440	treatment	DRB (100 microM)	-15 min	0 min	15 min
	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR7413441	treatment	DRB (100 microM)	-15 min	0 min	15 min
	treatment	doxycycline withdrawal	-3 day	0 day	3 day
SRR7413442	treatment	DRB (100 microM)	-30 min	0 min	30 min
	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR7413443	40	24,079,792	0.54377	0.739	4.47747	0.37051	2	2
SRR7413428	35	30,605,507	0.44388	0.7251	4.58729	0.50107	1	2
SRR7413429	35	24,611,899	0.3634	0.6626	4.35659	0.56863	1	2
SRR7413430	35	27,364,828	0.43391	0.6647	3.93463	0.48986	2	2
SRR7413431	35	32,633,525	0.33178	0.7035	3.80941	0.60528	1	2
SRR7413432	35	32,389,665	0.44085	0.704	4.16131	0.47733	2	2
SRR7413433	35	30,112,817	0.36763	0.7097	3.70743	0.55645	1	2
SRR7413434	35	37,042,766	0.67457	0.5943	4.27897	0.25024	3	2
SRR7413435	35	32,334,712	0.40907	0.7462	4.17581	0.51298	1	2
SRR7413436	40	25,365,387	0.36783	0.7984	3.91378	0.53805	1	2
SRR7413437	40	26,602,829	0.32014	0.8077	3.83092	0.59817	1	2
SRR7413438	40	23,951,512	0.41354	0.7565	4.0263	0.5008	1	2
SRR7413439	40	27,292,773	0.47597	0.7308	4.45552	0.44489	2	2
SRR7413440	40	28,253,864	0.43866	0.7935	3.87257	0.47557	2	2
SRR7413441	40	24,681,125	0.37806	0.7691	4.131	0.54606	1	2
SRR7413442	40	27,137,172	0.60476	0.7462	4.54545	0.30521	3	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR7413443	14160	5389	4723	1777	12445	5205	3432	2106
SRR7413428	21554	7464	8037	3257	13622	5080	3994	2583
SRR7413429	17084	5560	6728	1993	9555	3447	2804	1559
SRR7413430	13934	5138	4562	2390	11952	4991	3209	2272
SRR7413431	15174	5300	4986	3249	15131	5514	4846	3192
SRR7413432	19214	7470	6582	3031	16109	5912	5087	2925
SRR7413433	17109	6135	5720	3258	15414	5740	4833	2998
SRR7413434	16685	6843	5614	1675	10912	4705	2750	1646
SRR7413435	22721	8088	7839	4441	18836	6169	6451	3946
SRR7413436	22146	8705	7399	3731	15419	5568	4623	3145
SRR7413437	18468	6014	6974	2487	12860	3999	4052	2537
SRR7413438	11845	4596	3934	1547	10977	4416	3143	1923
SRR7413439	8248	2875	2685	959	8491	2876	2567	1864
SRR7413440	17282	6761	5983	2358	15109	5323	4871	2696
SRR7413441	11498	4198	3857	1643	11150	4017	3482	2093
SRR7413442	14048	5589	4841	1412	12612	5343	3487	2021

Top