DBNascent | Samples

SRR11811942,SRR11811943,SRR11811944,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR11811942	1003	Huang2020integrator	PRO-seq	ligation	control	False	4	1
SRR11811943	1004	Huang2020integrator	PRO-seq	ligation	control	False	4	2
SRR11811944	1005	Huang2020integrator	PRO-seq	ligation	experimental	False	3	1
SRR11811945	1006	Huang2020integrator	PRO-seq	ligation	experimental	False	3	2
SRR11811946	1007	Huang2020integrator	PRO-seq	ligation	experimental	False	3	1
SRR11811947	1008	Huang2020integrator	PRO-seq	ligation	experimental	False	3	2
SRR11811948	1009	Huang2020integrator	PRO-seq	ligation	experimental	False	4	1
SRR11811949	1010	Huang2020integrator	PRO-seq	ligation	experimental	False	3	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR11811942	D. melanogaster	cell line	DL1
SRR11811943	D. melanogaster	cell line	DL1
SRR11811944	D. melanogaster	cell line	DL1
SRR11811945	D. melanogaster	cell line	DL1
SRR11811946	D. melanogaster	cell line	DL1			copper-inducible FLAG-IntS8 (stable)
SRR11811947	D. melanogaster	cell line	DL1			copper-inducible FLAG-IntS8 (stable)
SRR11811948	D. melanogaster	cell line	DL1			copper-inducible FLAG-IntS8-WFEF/A mut (stable)
SRR11811949	D. melanogaster	cell line	DL1			copper-inducible FLAG-IntS8-WFEF/A mut (stable)

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR11811942	treatment	dsRNA beta-galactosidase (10 microg/well)	-60 hr	0 hr	60 hr
SRR11811943	treatment	dsRNA beta-galactosidase (10 microg/well)	-60 hr	0 hr	60 hr
SRR11811944	treatment	dsRNA IntS8 (10 microg/well)	-60 hr	0 hr	60 hr
SRR11811945	treatment	dsRNA IntS8 (10 microg/well)	-60 hr	0 hr	60 hr
SRR11811946	treatment	copper sulfate (200 microM)	-24 hr	0 hr	1 day
	treatment	dsRNA IntS8 (10 microg/well)	-60 hr	0 hr	60 hr
SRR11811947	treatment	copper sulfate (200 microM)	-24 hr	0 hr	1 day
	treatment	dsRNA IntS8 (10 microg/well)	-60 hr	0 hr	60 hr
SRR11811948	treatment	copper sulfate (200 microM)	-24 hr	0 hr	1 day
	treatment	dsRNA IntS8 (10 microg/well)	-60 hr	0 hr	60 hr
SRR11811949	treatment	copper sulfate (200 microM)	-24 hr	0 hr	1 day
	treatment	dsRNA IntS8 (10 microg/well)	-60 hr	0 hr	60 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR11811942	42	7,869,485	0.50921	0.671	3.55958	0.27218	4	2
SRR11811943	42	8,764,901	0.44388	0.7103	3.74987	0.32286	4	2
SRR11811944	42	12,802,392	0.33475	0.7518	3.25828	0.42725	3	2
SRR11811945	42	13,479,853	0.32622	0.7316	3.52854	0.43183	3	2
SRR11811946	42	14,377,114	0.42392	0.7322	3.19549	0.38023	3	2
SRR11811947	42	13,943,077	0.40204	0.7141	3.42724	0.3839	3	2
SRR11811948	42	11,014,102	0.35483	0.7218	3.51654	0.40338	4	2
SRR11811949	42	12,791,788	0.35802	0.7235	4.14388	0.40263	3	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR11811942	None	None	None	None	None	None	None	None
SRR11811943	None	None	None	None	None	None	None	None
SRR11811944	None	None	None	None	None	None	None	None
SRR11811945	None	None	None	None	None	None	None	None
SRR11811946	None	None	None	None	None	None	None	None
SRR11811947	None	None	None	None	None	None	None	None
SRR11811948	None	None	None	None	None	None	None	None
SRR11811949	None	None	None	None	None	None	None	None