DBNascent | Samples

SRR639050,SRR639051

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR639050	1076	Jin2013high	GRO-seq	not noted in GEO or publication	control	True	2	1
SRR639051	1077	Jin2013high	GRO-seq	not noted in GEO or publication	experimental	False	2	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR639050	H. sapiens	cell line	IMR90
SRR639051	H. sapiens	cell line	IMR90

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR639050	no treatment		None	None	None
SRR639051	treatment	TNF-alpha (10 ng/mL)	-1 hr	0 hr	1 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR639050	43	76,503,567	0.53633	0.8871	3.32336	0.58489	2	2
SRR639051	43	81,913,411	0.51127	0.8455	2.94268	0.59119	2	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR639050	41480	12285	16395	12334	37022	8772	17687	9919
SRR639051	41078	13821	15926	11432	35992	8995	17355	9304