DBNascent | Samples

SRR11793825,SRR11793826,SRR11793827,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR11793825	1121	Judd2020unpublished	PRO-seq	ligation	control	True	4	1
SRR11793826	1122	Judd2020unpublished	PRO-seq	ligation	control	True	4	2
SRR11793827	1123	Judd2020unpublished	PRO-seq variant	ligation	control	True	1	1
SRR11793828	1124	Judd2020unpublished	PRO-seq variant	ligation	control	True	1	2
SRR11793829	1125	Judd2020unpublished	PRO-seq variant	ligation	control	True	4	1
SRR11793830	1126	Judd2020unpublished	PRO-seq variant	ligation	control	True	3	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR11793825	H. sapiens	cell line	K562
SRR11793826	H. sapiens	cell line	K562
SRR11793827	H. sapiens	cell line	K562
SRR11793828	H. sapiens	cell line	K562
SRR11793829	H. sapiens	cell line	K562
SRR11793830	H. sapiens	cell line	K562

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR11793825	no treatment		None	None	None
SRR11793826	no treatment		None	None	None
SRR11793827	no treatment		None	None	None
SRR11793828	no treatment		None	None	None
SRR11793829	no treatment		None	None	None
SRR11793830	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR11793825	42	10,971,073	0.15188	0.5283	3.44893	0.70899	4	2
SRR11793826	42	12,880,370	0.17956	0.5863	3.24417	0.70663	4	2
SRR11793827	42	35,454,833	0.35842	0.6623	2.92158	0.67909	1	1
SRR11793828	42	32,744,557	0.32461	0.63	2.94256	0.68084	1	1
SRR11793829	42	47,553,719	0.86879	0.2394	3.85915	0.1058	4	2
SRR11793830	42	31,445,529	0.69573	0.6389	3.11111	0.41393	3	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR11793825	11853	6093	4073	1609	6839	4428	1832	860
SRR11793826	13449	6609	4808	2015	8597	5429	2426	1138
SRR11793827	19827	7186	8045	4107	13706	6399	4860	2685
SRR11793828	19533	7106	7904	3973	12781	6021	4502	2511
SRR11793829	1521	649	467	207	912	560	216	193
SRR11793830	10226	3491	4127	1773	6571	3654	1990	1137