DBNascent | Samples

SRR8384736,SRR8384737,SRR8384738

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR8384736	1231	Korkmaz2019crispr	GRO-seq	ligation	control	False	1	1
SRR8384737	1232	Korkmaz2019crispr	GRO-seq	ligation	experimental	False	1	1
SRR8384738	1233	Korkmaz2019crispr	GRO-seq	ligation	control	False	1	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR8384736	H. sapiens	cell line	MCF7	sgRNA control
SRR8384737	H. sapiens	cell line	MCF7	sgRNA 1118		CTCF binding site -/-
SRR8384738	H. sapiens	cell line	MCF7	sgRNA 1830		ER-alpha enhancer -/-

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR8384736	no treatment		None	None	None
SRR8384737	no treatment		None	None	None
SRR8384738	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR8384736	65	33,577,301	0.43852	0.9948	3.22835	0.71935	1	2
SRR8384737	65	25,445,070	0.32293	0.9948	3.17604	0.79181	1	2
SRR8384738	65	26,656,967	0.37956	0.9949	3.19913	0.75117	1	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR8384736	36875	12405	16263	7297	22721	8527	9287	4571
SRR8384737	33321	12123	14726	5591	18811	7802	7260	3264
SRR8384738	32719	11574	14496	5699	19197	8002	7543	3388