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SRR1501091,SRR1501092,SRR1501093,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | QC score | Replicate | Outlier? |
| SRR1501091 | 1439 | Leveille2015genome | GRO-seq | ligation | control | 3 | 1 | No |
| SRR1501092 | 1440 | Leveille2015genome | GRO-seq | ligation | control | 3 | 2 | No |
| SRR1501093 | 1441 | Leveille2015genome | GRO-seq | ligation | experimental | 3 | 1 | No |
| SRR1501094 | 1442 | Leveille2015genome | GRO-seq | ligation | experimental | 3 | 2 | No |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1501091 | H. sapiens | cell line | MCF7 | ||||
| SRR1501092 | H. sapiens | cell line | MCF7 | ||||
| SRR1501093 | H. sapiens | cell line | MCF7 | ||||
| SRR1501094 | H. sapiens | cell line | MCF7 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1501091 | no treatment | None | None | None | |
| SRR1501092 | no treatment | None | None | None | |
| SRR1501093 | treatment | nutlin-3 (8 microM) | -12 hr | 0 hr | 12 hr |
| SRR1501094 | treatment | nutlin-3 (8 microM) | -12 hr | 0 hr | 12 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1501091 | 51 | 144,145,553 | 0.78181 | 0.9713 | 3.23915 | 0.43669 | 3 | 2 |
| SRR1501092 | 51 | 117,834,619 | 0.73119 | 0.9691 | 3.18527 | 0.41221 | 3 | 2 |
| SRR1501093 | 51 | 128,688,556 | 0.77798 | 0.9686 | 3.11463 | 0.43912 | 3 | 2 |
| SRR1501094 | 51 | 111,623,299 | 0.6827 | 0.9698 | 3.19979 | 0.49642 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1501091 | 34444 | 14491 | 13260 | 6236 | 26397 | 8280 | 10456 | 6795 |
| SRR1501092 | 35642 | 15341 | 13641 | 6513 | 27062 | 8652 | 10824 | 6854 |
| SRR1501093 | 34134 | 12627 | 13498 | 7058 | 26165 | 8171 | 10504 | 6774 |
| SRR1501094 | 38315 | 14464 | 15140 | 8239 | 30293 | 8633 | 12379 | 8325 |
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