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SRR3633296,SRR3633297,SRR3633298,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR3633296 | 1476 | Li2017grid | GRO-seq | circularization | control | True | 4 | 1 |
| SRR3633297 | 1477 | Li2017grid | GRO-seq | circularization | control | True | 4 | 2 |
| SRR3633298 | 1478 | Li2017grid | GRO-seq | circularization | experimental | False | 4 | 1 |
| SRR3633299 | 1479 | Li2017grid | GRO-seq | circularization | experimental | False | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR3633296 | H. sapiens | cell line | MDA-MB-231 | ||||
| SRR3633297 | H. sapiens | cell line | MDA-MB-231 | ||||
| SRR3633298 | H. sapiens | cell line | MDA-MB-231 | ||||
| SRR3633299 | H. sapiens | cell line | MDA-MB-231 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR3633296 | vehicle | DMSO (0.05%) | -6 hr | 0 hr | 6 hr |
| SRR3633297 | vehicle | DMSO (0.05%) | -6 hr | 0 hr | 6 hr |
| SRR3633298 | treatment | JQ1 (500 nM) | -6 hr | 0 hr | 6 hr |
| SRR3633299 | treatment | JQ1 (500 nM) | -6 hr | 0 hr | 6 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR3633296 | 40 | 17,419,904 | 0.87025 | 0.6333 | 4.7094 | 0.13245 | 4 | 2 |
| SRR3633297 | 40 | 18,132,243 | 0.85216 | 0.6568 | 4.84615 | 0.15139 | 4 | 2 |
| SRR3633298 | 40 | 19,263,034 | 0.86424 | 0.657 | 4.70992 | 0.14131 | 4 | 2 |
| SRR3633299 | 40 | 18,341,386 | 0.83766 | 0.6541 | 4.78102 | 0.16678 | 4 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR3633296 | 4441 | 2284 | 1361 | 329 | 2512 | 1745 | 590 | 259 |
| SRR3633297 | 6620 | 3479 | 2170 | 549 | 4288 | 3090 | 1023 | 347 |
| SRR3633298 | 6741 | 3634 | 2250 | 407 | 5098 | 3683 | 1248 | 364 |
| SRR3633299 | 7344 | 3924 | 2506 | 450 | 5702 | 4085 | 1387 | 442 |
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