Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR9825093,SRR9825094,SRR9825095,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR9825093 | 1508 | Li2020signalosome | PRO-seq | circularization | experimental | False | 4 | 1 |
| SRR9825094 | 1509 | Li2020signalosome | PRO-seq | circularization | experimental | False | 4 | 2 |
| SRR9825095 | 1510 | Li2020signalosome | PRO-seq | circularization | experimental | False | 4 | 1 |
| SRR9825096 | 1511 | Li2020signalosome | PRO-seq | circularization | experimental | False | 4 | 2 |
| SRR9825097 | 1512 | Li2020signalosome | PRO-seq | circularization | experimental | False | 4 | 1 |
| SRR9825098 | 1513 | Li2020signalosome | PRO-seq | circularization | experimental | False | 4 | 2 |
| SRR9825099 | 1514 | Li2020signalosome | PRO-seq | circularization | experimental | False | 4 | 1 |
| SRR9825100 | 1515 | Li2020signalosome | PRO-seq | circularization | experimental | False | 4 | 2 |
| SRR9825101 | 1516 | Li2020signalosome | PRO-seq | circularization | control | False | 4 | 1 |
| SRR9825102 | 1517 | Li2020signalosome | PRO-seq | circularization | control | False | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR9825093 | R. norvegicus | primary cell | cardiomyocyte | Srf S103A (stable) | |||
| SRR9825094 | R. norvegicus | primary cell | cardiomyocyte | Srf S103A (stable) | |||
| SRR9825095 | R. norvegicus | primary cell | cardiomyocyte | Srf S103A (stable) | |||
| SRR9825096 | R. norvegicus | primary cell | cardiomyocyte | Srf S103A (stable) | |||
| SRR9825097 | R. norvegicus | primary cell | cardiomyocyte | Srf S103D (stable) | |||
| SRR9825098 | R. norvegicus | primary cell | cardiomyocyte | Srf S103D (stable) | |||
| SRR9825099 | R. norvegicus | primary cell | cardiomyocyte | Srf (stable) | |||
| SRR9825100 | R. norvegicus | primary cell | cardiomyocyte | Srf (stable) | |||
| SRR9825101 | R. norvegicus | primary cell | cardiomyocyte | Srf (stable) | |||
| SRR9825102 | R. norvegicus | primary cell | cardiomyocyte | Srf (stable) |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR9825093 | treatment | phenylephrine (20 microM) | -1 hr | 0 hr | 1 hr |
| SRR9825094 | treatment | phenylephrine (20 microM) | -1 hr | 0 hr | 1 hr |
| SRR9825095 | no treatment | None | None | None | |
| SRR9825096 | no treatment | None | None | None | |
| SRR9825097 | treatment | phenylephrine (20 microM) | -1 hr | 0 hr | 1 hr |
| SRR9825098 | treatment | phenylephrine (20 microM) | -1 hr | 0 hr | 1 hr |
| SRR9825099 | treatment | phenylephrine (20 microM) | -1 hr | 0 hr | 1 hr |
| SRR9825100 | treatment | phenylephrine (20 microM) | -1 hr | 0 hr | 1 hr |
| SRR9825101 | no treatment | None | None | None | |
| SRR9825102 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR9825093 | 75 | 53,360,114 | 0.93005 | 0.8311 | 6.78614 | 0.0788 | 4 | 3 |
| SRR9825094 | 75 | 53,104,820 | 0.92006 | 0.8186 | 6.87636 | 0.08929 | 4 | 3 |
| SRR9825095 | 75 | 92,264,253 | 0.92018 | 0.8151 | 6.69553 | 0.09072 | 4 | 3 |
| SRR9825096 | 75 | 44,972,112 | 0.92423 | 0.8197 | 7.30042 | 0.08413 | 4 | 4 |
| SRR9825097 | 75 | 72,960,394 | 0.93055 | 0.8394 | 6.84044 | 0.07986 | 4 | 3 |
| SRR9825098 | 75 | 44,039,791 | 0.93029 | 0.8403 | 7.0226 | 0.07829 | 4 | 4 |
| SRR9825099 | 75 | 53,108,026 | 0.9301 | 0.8557 | 7.09615 | 0.07973 | 4 | 4 |
| SRR9825100 | 75 | 56,549,288 | 0.92683 | 0.8101 | 6.9261 | 0.08189 | 4 | 3 |
| SRR9825101 | 75 | 52,122,695 | 0.92434 | 0.8316 | 7.00964 | 0.08421 | 4 | 4 |
| SRR9825102 | 75 | 45,863,890 | 0.92347 | 0.8236 | 6.9779 | 0.08435 | 4 | 3 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR9825093 | None | None | None | None | None | None | None | None |
| SRR9825094 | None | None | None | None | None | None | None | None |
| SRR9825095 | None | None | None | None | None | None | None | None |
| SRR9825096 | None | None | None | None | None | None | None | None |
| SRR9825097 | None | None | None | None | None | None | None | None |
| SRR9825098 | None | None | None | None | None | None | None | None |
| SRR9825099 | None | None | None | None | None | None | None | None |
| SRR9825100 | None | None | None | None | None | None | None | None |
| SRR9825101 | None | None | None | None | None | None | None | None |
| SRR9825102 | None | None | None | None | None | None | None | None |
Top