DBNascent | Samples

SRR10298307,SRR10298308,SRR10298309,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR10298307	1518	Li2021comprehensive	GRO-seq	ligation	control	True	2	1
SRR10298308	1519	Li2021comprehensive	GRO-seq	ligation	control	True	1	2
SRR10298309	1520	Li2021comprehensive	GRO-seq	ligation	control	True	1	1
SRR10298310	1521	Li2021comprehensive	GRO-seq	ligation	control	True	2	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR10298307	H. sapiens	cell line	MCF7
SRR10298308	H. sapiens	cell line	MCF7
SRR10298309	H. sapiens	cell line	MDA-MB-231
SRR10298310	H. sapiens	cell line	MDA-MB-231

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR10298307	no treatment		None	None	None
SRR10298308	no treatment		None	None	None
SRR10298309	no treatment		None	None	None
SRR10298310	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR10298307	51	64,406,759	0.57083	0.9965	3.76732	0.78123	2	2
SRR10298308	51	49,305,935	0.43185	0.9966	3.83663	0.79466	1	2
SRR10298309	51	59,266,310	0.47886	0.9969	4.16202	0.77173	1	2
SRR10298310	51	114,976,371	0.57341	0.996	3.5828	0.7976	2	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR10298307	34011	14259	13227	5974	20744	7922	7772	4357
SRR10298308	35210	15186	13573	6353	21505	8278	8169	4500
SRR10298309	48464	15690	19956	12187	34369	8625	15064	9787
SRR10298310	51351	15547	20922	14208	41535	8761	18776	12675