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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR8767369	1701	Liu2020immediate	GRO-seq	circularization	control	True	5	1
SRR8767370	1702	Liu2020immediate	GRO-seq	circularization	control	True	5	2
SRR8767371	1703	Liu2020immediate	GRO-seq	circularization	experimental	False	4	1
SRR8767372	1704	Liu2020immediate	GRO-seq	circularization	experimental	False	4	2
SRR8767373	1705	Liu2020immediate	GRO-seq	circularization	experimental	False	4	1
SRR8767374	1706	Liu2020immediate	GRO-seq	circularization	experimental	False	4	2
SRR8767375	1707	Liu2020immediate	GRO-seq	circularization	experimental	False	4	1
SRR8767376	1708	Liu2020immediate	GRO-seq	circularization	experimental	False	4	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR8767369	A. thaliana	tissue	leaf		Col-0
SRR8767370	A. thaliana	tissue	leaf		Col-0
SRR8767371	A. thaliana	tissue	leaf		Col-0
SRR8767372	A. thaliana	tissue	leaf		Col-0
SRR8767373	A. thaliana	tissue	leaf		Col-0
SRR8767374	A. thaliana	tissue	leaf		Col-0
SRR8767375	A. thaliana	tissue	leaf		Col-0
SRR8767376	A. thaliana	tissue	leaf		Col-0

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR8767369	no treatment		None	None	None
SRR8767370	no treatment		None	None	None
SRR8767371	treatment	heat shock (45 Celsius)	-5 min	0 min	5 min
SRR8767372	treatment	heat shock (45 Celsius)	-5 min	0 min	5 min
SRR8767373	treatment	heat pretreatment (37 Celsius)	-10080 min	-9990 min	90 min
	treatment	heat pretreatment (37 Celsius)	-1440 min	-1350 min	90 min
	treatment	heat pretreatment (37 Celsius)	-2880 min	-2790 min	90 min
	treatment	heat pretreatment (37 Celsius)	-4320 min	-4230 min	90 min
	treatment	heat pretreatment (37 Celsius)	-5760 min	-5670 min	90 min
	treatment	heat pretreatment (37 Celsius)	-7200 min	-7110 min	90 min
	treatment	heat pretreatment (37 Celsius)	-8640 min	-8550 min	90 min
SRR8767374	treatment	heat pretreatment (37 Celsius)	-10080 min	-9990 min	90 min
	treatment	heat pretreatment (37 Celsius)	-1440 min	-1350 min	90 min
	treatment	heat pretreatment (37 Celsius)	-2880 min	-2790 min	90 min
	treatment	heat pretreatment (37 Celsius)	-4320 min	-4230 min	90 min
	treatment	heat pretreatment (37 Celsius)	-5760 min	-5670 min	90 min
	treatment	heat pretreatment (37 Celsius)	-7200 min	-7110 min	90 min
	treatment	heat pretreatment (37 Celsius)	-8640 min	-8550 min	90 min
SRR8767375	treatment	heat pretreatment (37 Celsius)	-10080 min	-9990 min	90 min
	treatment	heat pretreatment (37 Celsius)	-1440 min	-1350 min	90 min
	treatment	heat pretreatment (37 Celsius)	-2880 min	-2790 min	90 min
	treatment	heat pretreatment (37 Celsius)	-4320 min	-4230 min	90 min
	treatment	heat pretreatment (37 Celsius)	-5760 min	-5670 min	90 min
	treatment	heat pretreatment (37 Celsius)	-7200 min	-7110 min	90 min
	treatment	heat pretreatment (37 Celsius)	-8640 min	-8550 min	90 min
	treatment	heat shock (45 Celsius)	-5 min	0 min	5 min
SRR8767376	treatment	heat pretreatment (37 Celsius)	-10080 min	-9990 min	90 min
	treatment	heat pretreatment (37 Celsius)	-1440 min	-1350 min	90 min
	treatment	heat pretreatment (37 Celsius)	-2880 min	-2790 min	90 min
	treatment	heat pretreatment (37 Celsius)	-4320 min	-4230 min	90 min
	treatment	heat pretreatment (37 Celsius)	-5760 min	-5670 min	90 min
	treatment	heat pretreatment (37 Celsius)	-7200 min	-7110 min	90 min
	treatment	heat pretreatment (37 Celsius)	-8640 min	-8550 min	90 min
	treatment	heat shock (45 Celsius)	-5 min	0 min	5 min

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR8767369	30	71,069,836	0.96251	0.5222	1.52118	0.0927	5	1
SRR8767370	30	103,670,328	0.95733	0.6274	1.60877	0.0788	5	1
SRR8767371	30	76,198,774	0.94372	0.4669	1.66097	0.11253	4	1
SRR8767372	30	98,289,804	0.93701	0.4815	1.78798	0.10151	4	1
SRR8767373	30	52,626,538	0.9149	0.4888	1.42033	0.14297	4	1
SRR8767374	30	67,602,289	0.94961	0.5659	1.40134	0.1041	4	1
SRR8767375	30	36,261,507	0.90234	0.4812	1.39913	0.14865	4	1
SRR8767376	30	55,018,374	0.9388	0.4917	1.43042	0.12093	4	1

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR8767369	None	None	None	None	None	None	None	None
SRR8767370	None	None	None	None	None	None	None	None
SRR8767371	None	None	None	None	None	None	None	None
SRR8767372	None	None	None	None	None	None	None	None
SRR8767373	None	None	None	None	None	None	None	None
SRR8767374	None	None	None	None	None	None	None	None
SRR8767375	None	None	None	None	None	None	None	None
SRR8767376	None	None	None	None	None	None	None	None