DBNascent | Samples

SRR3728886,SRR3728887,SRR3728888,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR3728886	1801	Malinen2017crosstalk	GRO-seq	circularization	experimental	False	2	1
SRR3728887	1802	Malinen2017crosstalk	GRO-seq	circularization	experimental	False	1	2
SRR3728888	1803	Malinen2017crosstalk	GRO-seq	circularization	experimental	False	1	1
SRR3728889	1804	Malinen2017crosstalk	GRO-seq	circularization	experimental	False	2	2
SRR3728890	1805	Malinen2017crosstalk	GRO-seq	circularization	control	True	2	1
SRR3728891	1806	Malinen2017crosstalk	GRO-seq	circularization	control	True	3	2
SRR3728892	1807	Malinen2017crosstalk	GRO-seq	circularization	experimental	False	2	1
SRR3728893	1808	Malinen2017crosstalk	GRO-seq	circularization	experimental	False	2	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR3728886	H. sapiens	cell line	LNCaP
SRR3728887	H. sapiens	cell line	LNCaP
SRR3728888	H. sapiens	cell line	LNCaP
SRR3728889	H. sapiens	cell line	LNCaP
SRR3728890	H. sapiens	cell line	LNCaP
SRR3728891	H. sapiens	cell line	LNCaP
SRR3728892	H. sapiens	cell line	LNCaP
SRR3728893	H. sapiens	cell line	LNCaP

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR3728886	treatment	TNF-alpha (1000 U/mL)	-2 hr	0 hr	2 hr
	treatment	dihydrotestosterone (100 nM)	-2 hr	0 hr	2 hr
SRR3728887	treatment	TNF-alpha (1000 U/mL)	-2 hr	0 hr	2 hr
	treatment	dihydrotestosterone (100 nM)	-2 hr	0 hr	2 hr
SRR3728888	treatment	dihydrotestosterone (100 nM)	-2 hr	0 hr	2 hr
SRR3728889	treatment	dihydrotestosterone (100 nM)	-2 hr	0 hr	2 hr
SRR3728890	vehicle	DMSO	-2 hr	0 hr	2 hr
SRR3728891	vehicle	DMSO	-2 hr	0 hr	2 hr
SRR3728892	treatment	TNF-alpha (1000 U/mL)	-2 hr	0 hr	2 hr
SRR3728893	treatment	TNF-alpha (1000 U/mL)	-2 hr	0 hr	2 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR3728886	51	17,955,778	0.39307	0.9128	2.15843	0.62912	2	1
SRR3728887	51	20,372,433	0.42269	0.9017	2.28571	0.61112	1	1
SRR3728888	51	22,103,541	0.41462	0.9144	2.47548	0.60826	1	1
SRR3728889	51	18,634,650	0.38287	0.9155	2.41414	0.63605	2	1
SRR3728890	51	18,313,936	0.40372	0.92	2.46372	0.6164	2	1
SRR3728891	51	13,321,378	0.4337	0.9039	2.53018	0.57236	3	1
SRR3728892	51	19,991,904	0.40728	0.9108	2.30274	0.61936	2	1
SRR3728893	51	19,331,982	0.43374	0.9043	2.46609	0.58855	2	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR3728886	18823	7942	7648	2948	12059	5832	4370	2012
SRR3728887	20194	7903	8517	3344	13605	6342	5240	2339
SRR3728888	21334	9388	8249	3478	14818	7091	5383	2570
SRR3728889	22018	9377	8746	3644	14458	6966	5228	2478
SRR3728890	21545	9408	8377	3527	14400	6979	5215	2501
SRR3728891	16939	7720	6508	2538	10961	6074	3514	1695
SRR3728892	22567	9444	9147	3968	15727	7271	6036	2869
SRR3728893	19666	8196	8057	3262	13775	6671	5197	2337