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SRZ1575914,SRZ1575919,SRZ1575923,...
| Gene read counts | Bidirectional read counts | ||
| ZIP archive | ZIP archive | ||
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRZ1575914 | 1812 | Mayer2015native | NET-seq | circularization | control | True | 4 | 2 |
| SRZ1575919 | 1813 | Mayer2015native | NET-seq | circularization | control | True | 4 | 1 |
| SRZ1575923 | 1814 | Mayer2015native | NET-seq | circularization | control | True | 4 | 2 |
| SRZ1575929 | 1815 | Mayer2015native | NET-seq | circularization | control | True | 4 | 1 |
| SRZ1575932 | 1816 | Mayer2015native | NET-seq | circularization | experimental | False | 4 | 1 |
| SRZ1928221 | 1817 | Mayer2015native | NET-seq | circularization | control | True | 5 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRZ1575914 | H. sapiens | cell line | HeLa S3 | ||||
| SRZ1575919 | H. sapiens | cell line | HeLa S3 | ||||
| SRZ1575923 | H. sapiens | cell line | HEK293T | ||||
| SRZ1575929 | H. sapiens | cell line | HeLa S3 | ||||
| SRZ1575932 | H. sapiens | cell line | HeLa S3 | ||||
| SRZ1928221 | H. sapiens | cell line | HEK293T |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRZ1575914 | no treatment | None | None | None | |
| SRZ1575919 | no treatment | None | None | None | |
| SRZ1575923 | no treatment | None | None | None | |
| SRZ1575929 | vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| SRZ1575932 | treatment | flavopiridol (1 microM) | -1 hr | 0 hr | 1 hr |
| SRZ1928221 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRZ1575914 | 50 | 399,108,388 | 0.86052 | 0.0987 | 4.76274 | 0.1697 | 4 | 2 |
| SRZ1575919 | 76 | 130,811,173 | 0.8448 | 0.1595 | 5.76522 | 0.15571 | 4 | 3 |
| SRZ1575923 | 50 | 691,129,043 | 0.94903 | 0.1407 | 4.24902 | 0.07853 | 4 | 2 |
| SRZ1575929 | 50 | 260,547,798 | 0.8431 | 0.1692 | 4.51592 | 0.19289 | 4 | 2 |
| SRZ1575932 | 50 | 290,953,610 | 0.90435 | 0.1801 | 5.63396 | 0.12364 | 4 | 3 |
| SRZ1928221 | 85 | 7,697,965 | 0.69776 | 0.0001 | None | 0.00004 | 5 | 0 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRZ1575914 | None | None | None | None | None | None | None | None |
| SRZ1575919 | None | None | None | None | None | None | None | None |
| SRZ1575923 | None | None | None | None | None | None | None | None |
| SRZ1575929 | None | None | None | None | None | None | None | None |
| SRZ1575932 | None | None | None | None | None | None | None | None |
| SRZ1928221 | None | None | None | None | None | None | None | None |
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