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SRR354106,SRZ354085,SRZ354088,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR354106 | 1818 | Mckinlay2011genome | PRO-seq | ligation | control | True | 5 | 1 |
| SRZ354085 | 1819 | Mckinlay2011genome | PRO-seq | ligation | control | True | 5 | 1 |
| SRZ354088 | 1820 | Mckinlay2011genome | PRO-seq | ligation | control | True | 5 | 2 |
| SRZ354090 | 1821 | Mckinlay2011genome | PRO-seq | ligation | control | True | 5 | 3 |
| SRZ354095 | 1822 | Mckinlay2011genome | PRO-seq | ligation | experimental | False | 5 | 1 |
| SRZ354098 | 1823 | Mckinlay2011genome | PRO-seq | ligation | experimental | False | 5 | 2 |
| SRZ354100 | 1824 | Mckinlay2011genome | PRO-seq | ligation | experimental | False | 5 | 3 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR354106 | S. cerevisiae | organism | whole yeast | BY4742 | |||
| SRZ354085 | S. cerevisiae | organism | whole yeast | BY4742 | |||
| SRZ354088 | S. cerevisiae | organism | whole yeast | BY4742 | |||
| SRZ354090 | S. cerevisiae | organism | whole yeast | BY4742 | |||
| SRZ354095 | S. cerevisiae | organism | whole yeast | BY4742 | |||
| SRZ354098 | S. cerevisiae | organism | whole yeast | BY4742 | |||
| SRZ354100 | S. cerevisiae | organism | whole yeast | BY4742 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR354106 | no treatment | None | None | None | |
| SRZ354085 | no treatment | None | None | None | |
| SRZ354088 | no treatment | None | None | None | |
| SRZ354090 | no treatment | None | None | None | |
| SRZ354095 | treatment | heat shock (39 Celsius) | -20 min | 0 min | 20 min |
| SRZ354098 | treatment | heat shock (39 Celsius) | -20 min | 0 min | 20 min |
| SRZ354100 | treatment | heat shock (39 Celsius) | -20 min | 0 min | 20 min |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR354106 | 36 | 21,529,363 | 0.99393 | 0.8437 | 0.32458 | 0.00913 | 5 | 1 |
| SRZ354085 | 36 | 20,377,069 | 0.99196 | 0.8139 | 0.28883 | 0.01255 | 5 | 1 |
| SRZ354088 | 36 | 17,800,440 | 0.98613 | 0.8946 | 0.2915 | 0.01944 | 5 | 1 |
| SRZ354090 | 36 | 24,313,875 | 0.99363 | 0.8873 | 0.22789 | 0.01279 | 5 | 1 |
| SRZ354095 | 36 | 6,317,510 | 0.98525 | 0.5511 | 0.5899 | 0.00649 | 5 | 1 |
| SRZ354098 | 36 | 7,463,232 | 0.98647 | 0.5109 | 0.67585 | 0.00651 | 5 | 1 |
| SRZ354100 | 36 | 4,813,921 | 0.98555 | 0.6822 | 0.54508 | 0.00647 | 5 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR354106 | None | None | None | None | None | None | None | None |
| SRZ354085 | None | None | None | None | None | None | None | None |
| SRZ354088 | None | None | None | None | None | None | None | None |
| SRZ354090 | None | None | None | None | None | None | None | None |
| SRZ354095 | None | None | None | None | None | None | None | None |
| SRZ354098 | None | None | None | None | None | None | None | None |
| SRZ354100 | None | None | None | None | None | None | None | None |
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