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SRR1041870,SRR1041871,SRR1041872,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1041870 | 1845 | Miller2015senataxin | GRO-seq | ligation | control | False | 5 | 1 |
| SRR1041871 | 1846 | Miller2015senataxin | GRO-seq | ligation | experimental | False | 5 | 1 |
| SRR1041872 | 1847 | Miller2015senataxin | GRO-seq | ligation | experimental | False | 5 | 1 |
| SRR1041873 | 1848 | Miller2015senataxin | GRO-seq | ligation | experimental | False | 5 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1041870 | H. sapiens | cell line | A549 | siRNA control | |||
| SRR1041871 | H. sapiens | cell line | A549 | siRNA control | |||
| SRR1041872 | H. sapiens | cell line | A549 | siRNA Setx | |||
| SRR1041873 | H. sapiens | cell line | A549 | siRNA Setx |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1041870 | no treatment | None | None | None | |
| SRR1041871 | treatment | influenza virus strain PR8-delta-NS1 (MOI 5) | -4 hr | 0 hr | 4 hr |
| SRR1041872 | no treatment | None | None | None | |
| SRR1041873 | treatment | influenza virus strain PR8-delta-NS1 (MOI 5) | -4 hr | 0 hr | 4 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1041870 | 51 | 142,368,083 | 0.97786 | 0.6004 | 2.61288 | 0.14839 | 5 | 1 |
| SRR1041871 | 51 | 129,766,689 | 0.95464 | 0.5965 | 2.31684 | 0.24041 | 5 | 1 |
| SRR1041872 | 51 | 159,438,686 | 0.97995 | 0.658 | 2.35756 | 0.11336 | 5 | 1 |
| SRR1041873 | 51 | 140,980,596 | 0.96097 | 0.5654 | 2.61447 | 0.21473 | 5 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1041870 | 11691 | 4873 | 4886 | 1392 | 3911 | 2409 | 1101 | 410 |
| SRR1041871 | None | None | None | None | None | None | None | None |
| SRR1041872 | 7592 | 3295 | 3192 | 925 | 3843 | 2472 | 1029 | 457 |
| SRR1041873 | 16467 | 6627 | 6863 | 2183 | 7338 | 4037 | 2315 | 956 |
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