Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR2634645,SRR2634646,SRR2634647,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR2634645 | 2006 | Orioli2016human | EU-seq | random primed | control | False | 4 | 1 |
| SRR2634646 | 2007 | Orioli2016human | EU-seq | random primed | control | False | 4 | 2 |
| SRR2634647 | 2008 | Orioli2016human | EU-seq | random primed | control | False | 4 | 3 |
| SRR2634648 | 2009 | Orioli2016human | EU-seq | random primed | control | True | 5 | 1 |
| SRR2634649 | 2010 | Orioli2016human | EU-seq | random primed | control | True | 5 | 2 |
| SRR2634650 | 2011 | Orioli2016human | EU-seq | random primed | control | True | 5 | 3 |
| SRR2634651 | 2012 | Orioli2016human | EU-seq | random primed | experimental | False | 4 | 1 |
| SRR2634652 | 2013 | Orioli2016human | EU-seq | random primed | experimental | False | 4 | 2 |
| SRR2634653 | 2014 | Orioli2016human | EU-seq | random primed | experimental | False | 4 | 3 |
| SRR2634654 | 2015 | Orioli2016human | EU-seq | random primed | experimental | False | 5 | 1 |
| SRR2634655 | 2016 | Orioli2016human | EU-seq | random primed | experimental | False | 5 | 2 |
| SRR2634656 | 2017 | Orioli2016human | EU-seq | random primed | experimental | False | 5 | 3 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR2634645 | H. sapiens | cell line | IMR90 | ||||
| SRR2634646 | H. sapiens | cell line | IMR90 | ||||
| SRR2634647 | H. sapiens | cell line | IMR90 | ||||
| SRR2634648 | H. sapiens | cell line | IMR90 | ||||
| SRR2634649 | H. sapiens | cell line | IMR90 | ||||
| SRR2634650 | H. sapiens | cell line | IMR90 | ||||
| SRR2634651 | H. sapiens | cell line | IMR90 | ||||
| SRR2634652 | H. sapiens | cell line | IMR90 | ||||
| SRR2634653 | H. sapiens | cell line | IMR90 | ||||
| SRR2634654 | H. sapiens | cell line | IMR90 | ||||
| SRR2634655 | H. sapiens | cell line | IMR90 | ||||
| SRR2634656 | H. sapiens | cell line | IMR90 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR2634645 | treatment | ethynyl uridine (250 microM) | -5 hr | 0 hr | 5 hr |
| SRR2634646 | treatment | ethynyl uridine (250 microM) | -5 hr | 0 hr | 5 hr |
| SRR2634647 | treatment | ethynyl uridine (250 microM) | -5 hr | 0 hr | 5 hr |
| SRR2634648 | vehicle | DMSO | -5 hr | 0 hr | 5 hr |
| SRR2634649 | vehicle | DMSO | -5 hr | 0 hr | 5 hr |
| SRR2634650 | vehicle | DMSO | -5 hr | 0 hr | 5 hr |
| SRR2634651 | treatment | ethynyl uridine (250 microM) | -5 hr | 0 hr | 5 hr |
| treatment | serum starvation | -5 hr | 0 hr | 5 hr | |
| SRR2634652 | treatment | ethynyl uridine (250 microM) | -5 hr | 0 hr | 5 hr |
| treatment | serum starvation | -5 hr | 0 hr | 5 hr | |
| SRR2634653 | treatment | ethynyl uridine (250 microM) | -5 hr | 0 hr | 5 hr |
| treatment | serum starvation | -5 hr | 0 hr | 5 hr | |
| SRR2634654 | treatment | serum starvation | -5 hr | 0 hr | 5 hr |
| vehicle | DMSO | -5 hr | 0 hr | 5 hr | |
| SRR2634655 | treatment | serum starvation | -5 hr | 0 hr | 5 hr |
| vehicle | DMSO | -5 hr | 0 hr | 5 hr | |
| SRR2634656 | treatment | serum starvation | -5 hr | 0 hr | 5 hr |
| vehicle | DMSO | -5 hr | 0 hr | 5 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR2634645 | 101 | 42,067,502 | 0.93683 | 0.2754 | 2.02027 | 0.05482 | 4 | 1 |
| SRR2634646 | 101 | 39,445,283 | 0.93566 | 0.2736 | 2.22302 | 0.05493 | 4 | 1 |
| SRR2634647 | 101 | 34,801,493 | 0.93833 | 0.3076 | 3.55372 | 0.05112 | 4 | 2 |
| SRR2634648 | 101 | 10,340,012 | 0.98688 | 0.3133 | 0.5 | 0.00785 | 5 | 1 |
| SRR2634649 | 101 | 13,243,539 | 0.97837 | 0.2139 | 1.25 | 0.01064 | 5 | 1 |
| SRR2634650 | 101 | 14,179,298 | 0.98673 | 0.2292 | 0.66667 | 0.00764 | 5 | 1 |
| SRR2634651 | 101 | 22,287,260 | 0.93009 | 0.3483 | 2.60241 | 0.05041 | 4 | 1 |
| SRR2634652 | 101 | 19,092,101 | 0.91476 | 0.3571 | 2.93827 | 0.06111 | 4 | 1 |
| SRR2634653 | 101 | 15,757,711 | 0.90777 | 0.3654 | 2.98438 | 0.06334 | 4 | 1 |
| SRR2634654 | 101 | 16,979,335 | 0.25948 | 0.0564 | 2.25 | 0.37683 | 5 | 1 |
| SRR2634655 | 101 | 17,459,233 | 0.3075 | 0.0504 | 1.56522 | 0.22072 | 5 | 1 |
| SRR2634656 | 101 | 15,759,186 | 0.14661 | 0.0492 | 1.20833 | 0.3342 | 5 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR2634645 | None | None | None | None | 1746 | 410 | 623 | 508 |
| SRR2634646 | None | None | None | None | 1535 | 357 | 555 | 471 |
| SRR2634647 | None | None | None | None | 1775 | 347 | 658 | 604 |
| SRR2634648 | None | None | None | None | 86 | 18 | 23 | 21 |
| SRR2634649 | None | None | None | None | 143 | 35 | 46 | 37 |
| SRR2634650 | None | None | None | None | 112 | 24 | 30 | 29 |
| SRR2634651 | None | None | None | None | 1365 | 275 | 490 | 454 |
| SRR2634652 | None | None | None | None | 1321 | 261 | 472 | 457 |
| SRR2634653 | None | None | None | None | 1179 | 218 | 419 | 434 |
| SRR2634654 | None | None | None | None | 314 | 37 | 73 | 126 |
| SRR2634655 | None | None | None | None | 247 | 28 | 50 | 109 |
| SRR2634656 | None | None | None | None | 211 | 32 | 41 | 112 |
Top