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SRR5929958,SRR5929959,SRR5929960,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR5929958 | 2037 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR5929959 | 2038 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR5929960 | 2039 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR5929961 | 2040 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 2 |
| SRR5929962 | 2041 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR5929963 | 2042 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 2 |
| SRR5929964 | 2043 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR5929965 | 2044 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 2 |
| SRR5929966 | 2045 | Parua2018cdk9-pp1 | PRO-seq | ligation | control | False | 4 | 1 |
| SRR5929967 | 2046 | Parua2018cdk9-pp1 | PRO-seq | ligation | control | False | 4 | 2 |
| SRR5929968 | 2047 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR5929969 | 2048 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 2 |
| SRR5929970 | 2049 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR5929971 | 2050 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 2 |
| SRR5929972 | 2051 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR5929973 | 2052 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 2 |
| SRR5929974 | 2053 | Parua2018cdk9-pp1 | PRO-seq | ligation | control | False | 4 | 1 |
| SRR5929975 | 2054 | Parua2018cdk9-pp1 | PRO-seq | ligation | control | False | 4 | 2 |
| SRR5929976 | 2055 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR5929977 | 2056 | Parua2018cdk9-pp1 | PRO-seq | ligation | experimental | False | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR5929958 | S. pombe | organism | whole yeast | LV7 (cdk9as) | cdk9T120G::kanMX6 leu1-32 ura4-D18 his3-D1 ade6-M210 h+ | ||
| SRR5929959 | S. pombe | organism | whole yeast | LV7 (cdk9as) | cdk9T120G::kanMX6 leu1-32 ura4-D18 his3-D1 ade6-M210 h+ | ||
| SRR5929960 | S. pombe | organism | whole yeast | LV7 (cdk9as) | cdk9T120G::kanMX6 leu1-32 ura4-D18 his3-D1 ade6-M210 h+ | ||
| SRR5929961 | S. pombe | organism | whole yeast | LV7 (cdk9as) | cdk9T120G::kanMX6 leu1-32 ura4-D18 his3-D1 ade6-M210 h+ | ||
| SRR5929962 | S. pombe | organism | whole yeast | FY10092 (dis2-11) | dis2-11 leu1-32 ura4-D18 h+ | ||
| SRR5929963 | S. pombe | organism | whole yeast | FY10092 (dis2-11) | dis2-11 leu1-32 ura4-D18 h+ | ||
| SRR5929964 | S. pombe | organism | whole yeast | FY10092 (dis2-11) | dis2-11 leu1-32 ura4-D18 h+ | ||
| SRR5929965 | S. pombe | organism | whole yeast | FY10092 (dis2-11) | dis2-11 leu1-32 ura4-D18 h+ | ||
| SRR5929966 | S. pombe | organism | whole yeast | FY10092 (dis2-11) | dis2-11 leu1-32 ura4-D18 h+ | ||
| SRR5929967 | S. pombe | organism | whole yeast | FY10092 (dis2-11) | dis2-11 leu1-32 ura4-D18 h+ | ||
| SRR5929968 | S. pombe | organism | whole yeast | FY10092 (dis2-11) | dis2-11 leu1-32 ura4-D18 h+ | ||
| SRR5929969 | S. pombe | organism | whole yeast | FY10092 (dis2-11) | dis2-11 leu1-32 ura4-D18 h+ | ||
| SRR5929970 | S. pombe | organism | whole yeast | PP185 (cdk9as dis2-11) | cdk9T120G::natMx dis2-11 ura4-D18 leu1-32 | ||
| SRR5929971 | S. pombe | organism | whole yeast | PP185 (cdk9as dis2-11) | cdk9T120G::natMx dis2-11 ura4-D18 leu1-32 | ||
| SRR5929972 | S. pombe | organism | whole yeast | PP185 (cdk9as dis2-11) | cdk9T120G::natMx dis2-11 ura4-D18 leu1-32 | ||
| SRR5929973 | S. pombe | organism | whole yeast | PP185 (cdk9as dis2-11) | cdk9T120G::natMx dis2-11 ura4-D18 leu1-32 | ||
| SRR5929974 | S. pombe | organism | whole yeast | PP185 (cdk9as dis2-11) | cdk9T120G::natMx dis2-11 ura4-D18 leu1-32 | ||
| SRR5929975 | S. pombe | organism | whole yeast | PP185 (cdk9as dis2-11) | cdk9T120G::natMx dis2-11 ura4-D18 leu1-32 | ||
| SRR5929976 | S. pombe | organism | whole yeast | PP185 (cdk9as dis2-11) | cdk9T120G::natMx dis2-11 ura4-D18 leu1-32 | ||
| SRR5929977 | S. pombe | organism | whole yeast | PP185 (cdk9as dis2-11) | cdk9T120G::natMx dis2-11 ura4-D18 leu1-32 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR5929958 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| vehicle | DMSO | -5 min | 0 min | 5 min | |
| SRR5929959 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| vehicle | DMSO | -5 min | 0 min | 5 min | |
| SRR5929960 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| treatment | 3MB-PP1 (10 microM) | -5 min | 0 min | 5 min | |
| SRR5929961 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| treatment | 3MB-PP1 (10 microM) | -5 min | 0 min | 5 min | |
| SRR5929962 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| vehicle | DMSO | -5 min | 0 min | 5 min | |
| SRR5929963 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| vehicle | DMSO | -5 min | 0 min | 5 min | |
| SRR5929964 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| treatment | 3MB-PP1 (10 microM) | -5 min | 0 min | 5 min | |
| SRR5929965 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| treatment | 3MB-PP1 (10 microM) | -5 min | 0 min | 5 min | |
| SRR5929966 | vehicle | DMSO | -5 min | 0 min | 5 min |
| SRR5929967 | vehicle | DMSO | -5 min | 0 min | 5 min |
| SRR5929968 | treatment | 3MB-PP1 (10 microM) | -5 min | 0 min | 5 min |
| SRR5929969 | treatment | 3MB-PP1 (10 microM) | -5 min | 0 min | 5 min |
| SRR5929970 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| vehicle | DMSO | -5 min | 0 min | 5 min | |
| SRR5929971 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| vehicle | DMSO | -5 min | 0 min | 5 min | |
| SRR5929972 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| treatment | 3MB-PP1 (10 microM) | -5 min | 0 min | 5 min | |
| SRR5929973 | treatment | cold stress (18 Celsius) | -15 min | 0 min | 15 min |
| treatment | 3MB-PP1 (10 microM) | -5 min | 0 min | 5 min | |
| SRR5929974 | vehicle | DMSO | -5 min | 0 min | 5 min |
| SRR5929975 | vehicle | DMSO | -5 min | 0 min | 5 min |
| SRR5929976 | treatment | 3MB-PP1 (10 microM) | -5 min | 0 min | 5 min |
| SRR5929977 | treatment | 3MB-PP1 (10 microM) | -5 min | 0 min | 5 min |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR5929958 | 76 | 12,858,461 | 0.79598 | 0.829 | 8.0188 | 0.20099 | 3 | 4 |
| SRR5929959 | 76 | 14,331,682 | 0.78953 | 0.8121 | 7.17453 | 0.2135 | 3 | 4 |
| SRR5929960 | 76 | 11,839,769 | 0.80899 | 0.8542 | 4.39452 | 0.18816 | 4 | 2 |
| SRR5929961 | 76 | 15,281,249 | 0.82075 | 0.8284 | 4.28365 | 0.18956 | 4 | 2 |
| SRR5929962 | 76 | 11,226,261 | 0.85225 | 0.823 | 17.3733 | 0.1416 | 4 | 5 |
| SRR5929963 | 76 | 14,143,576 | 0.85054 | 0.8257 | 14.6067 | 0.15021 | 4 | 5 |
| SRR5929964 | 76 | 11,568,481 | 0.83611 | 0.8347 | 13.2755 | 0.15798 | 4 | 5 |
| SRR5929965 | 76 | 10,440,154 | 0.83992 | 0.8239 | 15.0586 | 0.15065 | 4 | 5 |
| SRR5929966 | 76 | 11,219,646 | 0.84794 | 0.8259 | 16.575 | 0.14491 | 4 | 5 |
| SRR5929967 | 76 | 16,922,890 | 0.83182 | 0.8351 | 10.8502 | 0.17657 | 4 | 5 |
| SRR5929968 | 76 | 11,833,827 | 0.84178 | 0.8371 | 13.0693 | 0.15341 | 4 | 5 |
| SRR5929969 | 76 | 11,313,468 | 0.83714 | 0.8269 | 13.2487 | 0.15599 | 4 | 5 |
| SRR5929970 | 76 | 10,421,902 | 0.83685 | 0.7856 | 12.9479 | 0.15539 | 4 | 5 |
| SRR5929971 | 76 | 10,523,530 | 0.82611 | 0.8451 | 11.6454 | 0.16604 | 4 | 5 |
| SRR5929972 | 76 | 11,989,404 | 0.79256 | 0.8201 | 5.16593 | 0.19865 | 4 | 3 |
| SRR5929973 | 76 | 12,464,347 | 0.8076 | 0.8001 | 5.63714 | 0.18725 | 4 | 3 |
| SRR5929974 | 76 | 11,323,506 | 0.83273 | 0.852 | 12.1889 | 0.16204 | 4 | 5 |
| SRR5929975 | 76 | 14,693,758 | 0.88785 | 0.792 | 20.086 | 0.11438 | 4 | 5 |
| SRR5929976 | 76 | 12,670,878 | 0.84877 | 0.8451 | 8.0979 | 0.15126 | 4 | 4 |
| SRR5929977 | 76 | 12,874,948 | 0.86229 | 0.8477 | 9.2014 | 0.13857 | 4 | 5 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR5929958 | None | None | None | None | None | None | None | None |
| SRR5929959 | None | None | None | None | None | None | None | None |
| SRR5929960 | None | None | None | None | None | None | None | None |
| SRR5929961 | None | None | None | None | None | None | None | None |
| SRR5929962 | None | None | None | None | None | None | None | None |
| SRR5929963 | None | None | None | None | None | None | None | None |
| SRR5929964 | None | None | None | None | None | None | None | None |
| SRR5929965 | None | None | None | None | None | None | None | None |
| SRR5929966 | None | None | None | None | None | None | None | None |
| SRR5929967 | None | None | None | None | None | None | None | None |
| SRR5929968 | None | None | None | None | None | None | None | None |
| SRR5929969 | None | None | None | None | None | None | None | None |
| SRR5929970 | None | None | None | None | None | None | None | None |
| SRR5929971 | None | None | None | None | None | None | None | None |
| SRR5929972 | None | None | None | None | None | None | None | None |
| SRR5929973 | None | None | None | None | None | None | None | None |
| SRR5929974 | None | None | None | None | None | None | None | None |
| SRR5929975 | None | None | None | None | None | None | None | None |
| SRR5929976 | None | None | None | None | None | None | None | None |
| SRR5929977 | None | None | None | None | None | None | None | None |
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