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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR10441340	2057	Patel2020robust	PRO-seq	ligation	control	False	1	1
SRR10441341	2058	Patel2020robust	PRO-seq	ligation	control	False	1	2
SRR10441342	2059	Patel2020robust	PRO-seq	ligation	experimental	False	1	1
SRR10441343	2060	Patel2020robust	PRO-seq	ligation	experimental	False	1	2
SRR10441344	2061	Patel2020robust	PRO-seq	ligation	experimental	False	1	1
SRR10441345	2062	Patel2020robust	PRO-seq	ligation	experimental	False	1	2
SRR10441346	2063	Patel2020robust	PRO-seq	ligation	control	False	4	1
SRR10441347	2064	Patel2020robust	PRO-seq	ligation	control	False	2	2
SRR10441348	2065	Patel2020robust	PRO-seq	ligation	control	False	2	3
SRR10441349	2066	Patel2020robust	PRO-seq	ligation	experimental	False	2	1
SRR10441350	2067	Patel2020robust	PRO-seq	ligation	experimental	False	2	2
SRR10441351	2068	Patel2020robust	PRO-seq	ligation	experimental	False	3	3
SRR10441352	2069	Patel2020robust	PRO-seq	ligation	experimental	False	3	1
SRR10441353	2070	Patel2020robust	PRO-seq	ligation	experimental	False	3	2
SRR10441354	2071	Patel2020robust	PRO-seq	ligation	experimental	False	3	3
SRR10441355	2072	Patel2020robust	PRO-seq	ligation	experimental	False	3	1
SRR10441356	2073	Patel2020robust	PRO-seq	ligation	experimental	False	4	2
SRR10441357	2074	Patel2020robust	PRO-seq	ligation	experimental	False	2	3
SRR10441358	2075	Patel2020robust	PRO-seq	ligation	experimental	False	4	1
SRR10441359	2076	Patel2020robust	PRO-seq	ligation	experimental	False	2	2
SRR10441360	2077	Patel2020robust	PRO-seq	ligation	experimental	False	1	3
SRR10441361	2078	Patel2020robust	PRO-seq	ligation	experimental	False	4	1
SRR10441362	2079	Patel2020robust	PRO-seq	ligation	experimental	False	1	2
SRR10441363	2080	Patel2020robust	PRO-seq	ligation	experimental	False	3	3

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR10441340	H. sapiens	cell line	HEK293T Flp-In
SRR10441341	H. sapiens	cell line	HEK293T Flp-In
SRR10441342	H. sapiens	cell line	HEK293T Flp-In			miR-1 (stable)
SRR10441343	H. sapiens	cell line	HEK293T Flp-In			miR-1 (stable)
SRR10441344	H. sapiens	cell line	HEK293T Flp-In			miR-122 (stable)
SRR10441345	H. sapiens	cell line	HEK293T Flp-In			miR-122 (stable)
SRR10441346	H. sapiens	cell line	HEK293T Flp-In
SRR10441347	H. sapiens	cell line	HEK293T Flp-In
SRR10441348	H. sapiens	cell line	HEK293T Flp-In
SRR10441349	H. sapiens	cell line	HEK293T Flp-In			miR-133a (stable)
SRR10441350	H. sapiens	cell line	HEK293T Flp-In			miR-133a (stable)
SRR10441351	H. sapiens	cell line	HEK293T Flp-In			miR-133a (stable)
SRR10441352	H. sapiens	cell line	HEK293T Flp-In			miR-155 (stable)
SRR10441353	H. sapiens	cell line	HEK293T Flp-In			miR-155 (stable)
SRR10441354	H. sapiens	cell line	HEK293T Flp-In			miR-155 (stable)
SRR10441355	H. sapiens	cell line	HEK293T Flp-In			miR-302a (stable)
SRR10441356	H. sapiens	cell line	HEK293T Flp-In			miR-302a (stable)
SRR10441357	H. sapiens	cell line	HEK293T Flp-In			miR-302a (stable)
SRR10441358	H. sapiens	cell line	HEK293T Flp-In			miR-372 (stable)
SRR10441359	H. sapiens	cell line	HEK293T Flp-In			miR-372 (stable)
SRR10441360	H. sapiens	cell line	HEK293T Flp-In			miR-372 (stable)
SRR10441361	H. sapiens	cell line	HEK293T Flp-In			miR-373 (stable)
SRR10441362	H. sapiens	cell line	HEK293T Flp-In			miR-373 (stable)
SRR10441363	H. sapiens	cell line	HEK293T Flp-In			miR-373 (stable)

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR10441340	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441341	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441342	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441343	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441344	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441345	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441346	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441347	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441348	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441349	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441350	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441351	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441352	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441353	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441354	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441355	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441356	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441357	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441358	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441359	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441360	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441361	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441362	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day
SRR10441363	treatment	doxycycline (1 microg/mL)	-7 day	0 day	7 day

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR10441340	15	30,288,406	0.31131	0.935	6.30705	0.78528	1	3
SRR10441341	15	30,783,992	0.30447	0.9295	6.07859	0.78875	1	3
SRR10441342	15	30,278,570	0.30549	0.9306	6.13188	0.78762	1	3
SRR10441343	15	31,018,755	0.31664	0.9352	6.3364	0.78705	1	3
SRR10441344	15	31,331,991	0.32884	0.9314	6.45559	0.7684	1	3
SRR10441345	15	33,369,837	0.30668	0.9322	5.90557	0.79285	1	3
SRR10441346	18	9,970,427	0.28095	0.9925	6.97468	0.71106	4	3
SRR10441347	18	19,375,386	0.28458	0.9904	6.42457	0.77665	2	3
SRR10441348	18	16,511,576	0.36137	0.9898	8.06223	0.69034	2	4
SRR10441349	18	16,308,344	0.25433	0.9901	5.11	0.79798	2	3
SRR10441350	19	17,685,960	0.19923	0.9919	4.91349	0.84926	2	2
SRR10441351	18	12,990,368	0.30932	0.9882	7.32558	0.71361	3	4
SRR10441352	18	11,869,533	0.27652	0.9916	6.36456	0.73868	3	3
SRR10441353	18	10,519,955	0.18785	0.9906	5.5483	0.80893	3	3
SRR10441354	18	14,803,208	0.36194	0.9903	8.31707	0.67857	3	4
SRR10441355	18	10,803,975	0.32288	0.9926	7.89655	0.68066	3	4
SRR10441356	18	5,103,824	0.10496	0.9896	4.24038	0.82473	4	2
SRR10441357	18	16,170,638	0.42478	0.9906	9.5423	0.62944	2	5
SRR10441358	19	5,723,378	0.26544	0.9923	8.22892	0.63926	4	4
SRR10441359	18	17,075,170	0.19999	0.9898	5.13199	0.84336	2	3
SRR10441360	18	20,212,393	0.42123	0.9906	8.90414	0.65719	1	4
SRR10441361	18	8,453,948	0.24408	0.9919	7.16245	0.72343	4	4
SRR10441362	18	21,737,758	0.25834	0.9909	6.24246	0.81352	1	3
SRR10441363	17	12,784,570	0.39569	0.9897	9.8213	0.62755	3	5

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR10441340	42999	22296	15041	6605	25460	8361	9558	5609
SRR10441341	42657	22575	14667	6395	25254	8385	9506	5484
SRR10441342	41795	21908	14575	6184	24474	8153	9130	5246
SRR10441343	43149	22228	15126	6746	25700	8231	9798	5715
SRR10441344	43167	22092	15008	6949	25935	8152	9841	5890
SRR10441345	42686	22351	14720	6754	26412	8398	10010	6017
SRR10441346	32007	18901	10978	3650	19265	10118	6681	2336
SRR10441347	37350	20175	13191	5454	22663	9230	8614	3792
SRR10441348	39316	21283	13902	5902	23882	10154	9237	4017
SRR10441349	38173	20373	13665	5532	22537	9810	8654	3650
SRR10441350	37197	19778	13424	5237	21616	9121	8301	3402
SRR10441351	39022	20357	14081	5953	23213	10080	8898	3823
SRR10441352	33646	19390	11586	4098	19832	9778	7148	2601
SRR10441353	32521	17650	11928	4067	19090	8872	6980	2487
SRR10441354	36377	20563	12645	4939	22071	10028	8294	3342
SRR10441355	33293	19253	11301	4243	20361	10540	7154	2702
SRR10441356	24338	13214	9168	2511	14209	8857	4485	1159
SRR10441357	38399	21074	13418	5767	24094	10881	9042	4082
SRR10441358	28026	16423	9722	3155	17835	10250	5938	1898
SRR10441359	38392	19067	14495	5931	22652	8871	9152	3773
SRR10441360	40194	21940	13887	6333	25441	10801	9817	4587
SRR10441361	31418	17969	11107	3677	18764	9940	6479	2240
SRR10441362	38351	20359	13645	5852	23193	8764	9018	4122
SRR10441363	36201	20369	12338	5141	22413	10720	8227	3424