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SRR5359616,SRR5359617,SRR5359618,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR5359616 | 2083 | Phanstiel2017static | PRO-seq | ligation | control | True | 4 | 1 |
| SRR5359617 | 2084 | Phanstiel2017static | PRO-seq | ligation | control | True | 4 | 2 |
| SRR5359618 | 2085 | Phanstiel2017static | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR5359619 | 2086 | Phanstiel2017static | PRO-seq | ligation | experimental | False | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR5359616 | H. sapiens | cell line | THP1 | ||||
| SRR5359617 | H. sapiens | cell line | THP1 | ||||
| SRR5359618 | H. sapiens | cell line | THP1 | ||||
| SRR5359619 | H. sapiens | cell line | THP1 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR5359616 | no treatment | None | None | None | |
| SRR5359617 | no treatment | None | None | None | |
| SRR5359618 | treatment | phorbol myristate acetate (100 nM) | -72 hr | 0 hr | 3 day |
| SRR5359619 | treatment | phorbol myristate acetate (100 nM) | -72 hr | 0 hr | 3 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR5359616 | 101 | 24,309,447 | 0.74271 | 0.8553 | 3.5066 | 0.19887 | 4 | 2 |
| SRR5359617 | 101 | 16,546,577 | 0.76502 | 0.8186 | 3.39377 | 0.16603 | 4 | 2 |
| SRR5359618 | 101 | 15,285,995 | 0.81885 | 0.8511 | 3.80695 | 0.08063 | 4 | 2 |
| SRR5359619 | 101 | 20,795,056 | 0.82705 | 0.8477 | 3.6345 | 0.09609 | 4 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR5359616 | 3851 | 975 | 2047 | 298 | 2904 | 758 | 1204 | 811 |
| SRR5359617 | 2369 | 715 | 1021 | 205 | 1838 | 490 | 667 | 581 |
| SRR5359618 | 1276 | 368 | 610 | 85 | 1029 | 272 | 412 | 270 |
| SRR5359619 | 2105 | 653 | 963 | 149 | 1535 | 473 | 611 | 374 |
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