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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR8234179	2249	Sendinc2019pcif1	PRO-cap	ligation	experimental	False	1	3
SRR8234171	2241	Sendinc2019pcif1	PRO-seq	ligation	control	False	1	1
SRR8234172	2242	Sendinc2019pcif1	PRO-seq	ligation	control	False	1	2
SRR8234173	2243	Sendinc2019pcif1	PRO-seq	ligation	control	False	1	3
SRR8234174	2244	Sendinc2019pcif1	PRO-seq	ligation	experimental	False	1	1
SRR8234175	2245	Sendinc2019pcif1	PRO-seq	ligation	experimental	False	1	2
SRR8234176	2246	Sendinc2019pcif1	PRO-seq	ligation	experimental	False	1	3
SRR8234177	2247	Sendinc2019pcif1	PRO-seq	ligation	experimental	False	1	1
SRR8234178	2248	Sendinc2019pcif1	PRO-seq	ligation	experimental	False	1	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR8234179	H. sapiens	cell line	MEL624	sgRNA Pcif1 clone 2		Pcif1 -/-
SRR8234171	H. sapiens	cell line	MEL624	sgRNA control
SRR8234172	H. sapiens	cell line	MEL624	sgRNA control
SRR8234173	H. sapiens	cell line	MEL624	sgRNA control
SRR8234174	H. sapiens	cell line	MEL624	sgRNA Pcif1 clone 1		Pcif1 -/-
SRR8234175	H. sapiens	cell line	MEL624	sgRNA Pcif1 clone 1		Pcif1 -/-
SRR8234176	H. sapiens	cell line	MEL624	sgRNA Pcif1 clone 1		Pcif1 -/-
SRR8234177	H. sapiens	cell line	MEL624	sgRNA Pcif1 clone 2		Pcif1 -/-
SRR8234178	H. sapiens	cell line	MEL624	sgRNA Pcif1 clone 2		Pcif1 -/-

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR8234179	no treatment		None	None	None
SRR8234171	no treatment		None	None	None
SRR8234172	no treatment		None	None	None
SRR8234173	no treatment		None	None	None
SRR8234174	no treatment		None	None	None
SRR8234175	no treatment		None	None	None
SRR8234176	no treatment		None	None	None
SRR8234177	no treatment		None	None	None
SRR8234178	no treatment		None	None	None

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR8234179	42	25,702,433	0.26641	0.7372	3.66813	0.71073	1	2
SRR8234171	42	31,282,752	0.30194	0.7516	3.43136	0.69927	1	2
SRR8234172	42	24,876,077	0.29252	0.7716	3.42635	0.71849	1	2
SRR8234173	42	24,555,367	0.2548	0.7471	3.47966	0.73352	1	2
SRR8234174	42	33,097,709	0.21768	0.7774	3.51475	0.7473	1	2
SRR8234175	42	26,256,488	0.28339	0.7458	3.76442	0.69886	1	2
SRR8234176	42	35,548,237	0.24988	0.756	3.44148	0.75232	1	2
SRR8234177	42	28,433,680	0.27837	0.7314	3.81223	0.68291	1	2
SRR8234178	42	27,055,623	0.26907	0.7484	3.70686	0.70435	1	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR8234179	37523	10378	17034	10204	27843	8549	11959	7210
SRR8234171	35332	10310	15665	9059	23529	7500	9787	5983
SRR8234172	30712	9692	13561	7655	22685	7758	9426	5419
SRR8234173	32692	9791	14350	8584	23724	8052	9832	5725
SRR8234174	43814	10890	19609	13056	31344	8168	14040	8733
SRR8234175	35408	9435	16416	9314	25474	8100	11126	6221
SRR8234176	43827	10963	19219	13520	33708	8683	15095	9534
SRR8234177	39739	10740	17909	11049	27692	8385	11919	7217
SRR8234178	36243	10236	16511	9566	27139	8596	11912	6661