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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5350746	2304	Slobodin2017transcription	GRO-seq	ligation	control	True	1	1
SRR5350747	2305	Slobodin2017transcription	GRO-seq	ligation	control	True	1	2
SRR5350748	2306	Slobodin2017transcription	GRO-seq	ligation	control	True	4	1
SRR5350749	2307	Slobodin2017transcription	GRO-seq	ligation	control	True	4	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5350746	H. sapiens	cell line	BJ
SRR5350747	H. sapiens	cell line	BJ
SRR5350748	H. sapiens	cell line	MCF7
SRR5350749	H. sapiens	cell line	MCF7

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5350746	no treatment		None	None	None
SRR5350747	no treatment		None	None	None
SRR5350748	no treatment		None	None	None
SRR5350749	no treatment		None	None	None

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5350746	65	22,442,409	0.33118	0.9939	3.0	0.76737	1	2
SRR5350747	65	31,172,254	0.42567	0.9936	3.02564	0.74391	1	2
SRR5350748	51	9,720,429	0.8822	0.9895	32.7077	0.11575	4	5
SRR5350749	51	9,898,371	0.89967	0.9895	29.36	0.09905	4	5

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5350746	34351	13027	14388	6297	19203	7913	7462	3801
SRR5350747	38521	14038	16198	7635	22598	8300	9200	4930
SRR5350748	9157	2522	2155	118	4496	1680	1145	158
SRR5350749	8188	2521	1817	91	4187	1758	1053	129