DBNascent | Samples

SRR10669536,SRR10669537,SRR10669538,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR10669536	2308	Smith2021peppro	PRO-seq	ligation	control	True	1	1
SRR10669537	2309	Smith2021peppro	PRO-seq	ligation	control	True	1	2
SRR10669538	2310	Smith2021peppro	PRO-seq	ligation	control	True	1	3
SRR10669539	2311	Smith2021peppro	PRO-seq	ligation	experimental	False	1	1
SRR10669540	2312	Smith2021peppro	PRO-seq	ligation	experimental	False	1	2
SRR10669541	2313	Smith2021peppro	PRO-seq	ligation	experimental	False	1	3

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR10669536	H. sapiens	cell line	ESC	H9
SRR10669537	H. sapiens	cell line	ESC	H9
SRR10669538	H. sapiens	cell line	ESC	H9
SRR10669539	H. sapiens	cell line	ESC	H9
SRR10669540	H. sapiens	cell line	ESC	H9
SRR10669541	H. sapiens	cell line	ESC	H9

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR10669536	vehicle	DMSO	-1 hr	0 hr	1 hr
SRR10669537	vehicle	DMSO	-1 hr	0 hr	1 hr
SRR10669538	vehicle	DMSO	-1 hr	0 hr	1 hr
SRR10669539	treatment	romidepsin (200 nM)	-1 hr	0 hr	1 hr
SRR10669540	treatment	romidepsin (200 nM)	-1 hr	0 hr	1 hr
SRR10669541	treatment	romidepsin (200 nM)	-1 hr	0 hr	1 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR10669536	35	27,662,060	0.1453	0.7065	3.64826	0.83369	1	2
SRR10669537	35	25,607,143	0.15305	0.6616	4.02657	0.79738	1	2
SRR10669538	35	24,885,129	0.11125	0.6724	3.76176	0.837	1	2
SRR10669539	35	25,790,563	0.17567	0.6269	4.74373	0.75042	1	2
SRR10669540	35	26,049,630	0.14092	0.6707	4.56427	0.78063	1	2
SRR10669541	35	29,137,956	0.23404	0.6657	4.63084	0.73114	1	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR10669536	28445	14248	10570	4450	19132	7897	7770	3034
SRR10669537	28316	14103	10626	4399	18738	7968	7472	2938
SRR10669538	28687	14206	10764	4597	18708	8020	7396	2968
SRR10669539	30203	15495	11325	4439	20924	9470	8456	3036
SRR10669540	31731	16014	11819	4969	22123	9442	9029	3505
SRR10669541	30625	15623	11450	4586	21756	9450	8752	3401