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SRR1930084,SRR1930085,SRR1930086,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1930084 | 2339 | Stender2017structural | GRO-seq | circularization | control | True | 2 | 1 |
| SRR1930085 | 2340 | Stender2017structural | GRO-seq | circularization | control | True | 4 | 2 |
| SRR1930086 | 2341 | Stender2017structural | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR1930087 | 2342 | Stender2017structural | GRO-seq | circularization | experimental | False | 3 | 2 |
| SRR1930088 | 2343 | Stender2017structural | GRO-seq | circularization | experimental | False | 5 | 1 |
| SRR1930089 | 2344 | Stender2017structural | GRO-seq | circularization | experimental | False | 4 | 2 |
| SRR1930090 | 2345 | Stender2017structural | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR1930091 | 2346 | Stender2017structural | GRO-seq | circularization | experimental | False | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1930084 | H. sapiens | cell line | MCF7 | ||||
| SRR1930085 | H. sapiens | cell line | MCF7 | ||||
| SRR1930086 | H. sapiens | cell line | MCF7 | ||||
| SRR1930087 | H. sapiens | cell line | MCF7 | ||||
| SRR1930088 | H. sapiens | cell line | MCF7 | ||||
| SRR1930089 | H. sapiens | cell line | MCF7 | ||||
| SRR1930090 | H. sapiens | cell line | MCF7 | ||||
| SRR1930091 | H. sapiens | cell line | MCF7 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1930084 | vehicle | DMSO | -30 min | 0 min | 30 min |
| SRR1930085 | vehicle | DMSO | -30 min | 0 min | 30 min |
| SRR1930086 | treatment | 17-beta-estradiol | -30 min | 0 min | 30 min |
| SRR1930087 | treatment | 17-beta-estradiol | -30 min | 0 min | 30 min |
| SRR1930088 | treatment | interleukin-1b | -30 min | 0 min | 30 min |
| SRR1930089 | treatment | interleukin-1b | -30 min | 0 min | 30 min |
| SRR1930090 | treatment | TNF-alpha | -30 min | 0 min | 30 min |
| SRR1930091 | treatment | TNF-alpha | -30 min | 0 min | 30 min |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1930084 | 51 | 15,044,629 | 0.63543 | 0.8336 | 4.67754 | 0.37302 | 2 | 2 |
| SRR1930085 | 51 | 10,367,659 | 0.53073 | 0.7052 | 3.22222 | 0.43925 | 4 | 2 |
| SRR1930086 | 51 | 14,288,619 | 0.61797 | 0.7636 | 3.893 | 0.38382 | 3 | 2 |
| SRR1930087 | 51 | 11,339,089 | 0.49253 | 0.7372 | 3.84252 | 0.49307 | 3 | 2 |
| SRR1930088 | 51 | 1,643,054 | 0.49606 | 0.8599 | 4.2 | 0.40307 | 5 | 2 |
| SRR1930089 | 50 | 10,359,368 | 0.77197 | 0.6702 | 3.83916 | 0.19571 | 4 | 2 |
| SRR1930090 | 51 | 13,658,960 | 0.64145 | 0.798 | 4.18908 | 0.36268 | 3 | 2 |
| SRR1930091 | 51 | 8,798,878 | 0.64055 | 0.7428 | 3.68047 | 0.3125 | 4 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1930084 | 10284 | 5331 | 3488 | 743 | 5593 | 3699 | 1310 | 521 |
| SRR1930085 | 6653 | 2833 | 2691 | 726 | 3285 | 1998 | 899 | 466 |
| SRR1930086 | 7878 | 3858 | 2737 | 696 | 4171 | 2677 | 1018 | 483 |
| SRR1930087 | 7754 | 3175 | 3215 | 778 | 3312 | 1808 | 976 | 491 |
| SRR1930088 | 662 | 348 | 239 | 79 | 286 | 166 | 66 | 64 |
| SRR1930089 | 680 | 160 | 314 | 38 | 454 | 154 | 194 | 113 |
| SRR1930090 | 8102 | 3978 | 2879 | 713 | 4115 | 2620 | 1028 | 492 |
| SRR1930091 | 4358 | 1806 | 1703 | 451 | 2126 | 1258 | 546 | 335 |
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