SRR1930084,SRR1930085,SRR1930086,...
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Gene read counts Bidirectional read counts Tfit regions dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.
Technical details
Sample name Sample ID Paper identifier Protocol Library prep Control/Experimental Wildtype & Untreated QC score Replicate
SRR1930084 2339 Stender2017structural GRO-seq circularization control True 2 1
SRR1930085 2340 Stender2017structural GRO-seq circularization control True 4 2
SRR1930086 2341 Stender2017structural GRO-seq circularization experimental False 3 1
SRR1930087 2342 Stender2017structural GRO-seq circularization experimental False 3 2
SRR1930088 2343 Stender2017structural GRO-seq circularization experimental False 5 1
SRR1930089 2344 Stender2017structural GRO-seq circularization experimental False 4 2
SRR1930090 2345 Stender2017structural GRO-seq circularization experimental False 3 1
SRR1930091 2346 Stender2017structural GRO-seq circularization experimental False 4 2
Cellular details
Sample name Organism Sample type Cell type Clone/Individual Strain Genotype Construct
SRR1930084 H. sapiens cell line MCF7
SRR1930085 H. sapiens cell line MCF7
SRR1930086 H. sapiens cell line MCF7
SRR1930087 H. sapiens cell line MCF7
SRR1930088 H. sapiens cell line MCF7
SRR1930089 H. sapiens cell line MCF7
SRR1930090 H. sapiens cell line MCF7
SRR1930091 H. sapiens cell line MCF7
Conditions
Sample name Condition type Treatment Start time End time Duration
SRR1930084 vehicle DMSO -30 min 0 min 30 min
SRR1930085 vehicle DMSO -30 min 0 min 30 min
SRR1930086 treatment 17-beta-estradiol -30 min 0 min 30 min
SRR1930087 treatment 17-beta-estradiol -30 min 0 min 30 min
SRR1930088 treatment interleukin-1b -30 min 0 min 30 min
SRR1930089 treatment interleukin-1b -30 min 0 min 30 min
SRR1930090 treatment TNF-alpha -30 min 0 min 30 min
SRR1930091 treatment TNF-alpha -30 min 0 min 30 min
Sample metrics
Sample name Raw read length Trim read depth Duplication proportion Proportion reads mapped Exon/intron ratio Unique read proportion Sample QC score Sample NRO score
SRR1930084 51 15,044,629 0.63543 0.8336 4.67754 0.37302 2 2
SRR1930085 51 10,367,659 0.53073 0.7052 3.22222 0.43925 4 2
SRR1930086 51 14,288,619 0.61797 0.7636 3.893 0.38382 3 2
SRR1930087 51 11,339,089 0.49253 0.7372 3.84252 0.49307 3 2
SRR1930088 51 1,643,054 0.49606 0.8599 4.2 0.40307 5 2
SRR1930089 50 10,359,368 0.77197 0.6702 3.83916 0.19571 4 2
SRR1930090 51 13,658,960 0.64145 0.798 4.18908 0.36268 3 2
SRR1930091 51 8,798,878 0.64055 0.7428 3.68047 0.3125 4 2
Bidirectionals
Sample name Tfit total bidirs Tfit promoter bidirs Tfit intronic bidirs Tfit intergenic bidirs dREG total bidirs dREG promoter bidirs dREG intronic bidirs dREG intergenic bidirs
SRR1930084 10284 5331 3488 743 5593 3699 1310 521
SRR1930085 6653 2833 2691 726 3285 1998 899 466
SRR1930086 7878 3858 2737 696 4171 2677 1018 483
SRR1930087 7754 3175 3215 778 3312 1808 976 491
SRR1930088 662 348 239 79 286 166 66 64
SRR1930089 680 160 314 38 454 154 194 113
SRR1930090 8102 3978 2879 713 4115 2620 1028 492
SRR1930091 4358 1806 1703 451 2126 1258 546 335
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