Explore DBNascent | browse or search sample metadata

Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR12091767	2359	Stengel2020definition	PRO-seq	ligation	control	True	1	1
SRR12091768	2360	Stengel2020definition	PRO-seq	ligation	control	True	1	2
SRR12091769	2361	Stengel2020definition	PRO-seq	ligation	experimental	False	1	1
SRR12091770	2362	Stengel2020definition	PRO-seq	ligation	experimental	False	1	2
SRR12091771	2363	Stengel2020definition	PRO-seq	ligation	experimental	False	1	1
SRR12091772	2364	Stengel2020definition	PRO-seq	ligation	experimental	False	1	2
SRR12091773	2365	Stengel2020definition	PRO-seq	ligation	experimental	False	1	1
SRR12091774	2366	Stengel2020definition	PRO-seq	ligation	experimental	False	1	2
SRR12091775	2367	Stengel2020definition	PRO-seq	ligation	experimental	False	1	1
SRR12091776	2368	Stengel2020definition	PRO-seq	ligation	experimental	False	1	2
SRR12091777	2369	Stengel2020definition	PRO-seq	ligation	experimental	False	2	1
SRR12091778	2370	Stengel2020definition	PRO-seq	ligation	experimental	False	1	2
SRR12091779	2371	Stengel2020definition	PRO-seq	ligation	experimental	False	3	1
SRR12091780	2372	Stengel2020definition	PRO-seq	ligation	experimental	False	2	2
SRR12091781	2373	Stengel2020definition	PRO-seq	ligation	experimental	False	2	1
SRR12091782	2374	Stengel2020definition	PRO-seq	ligation	experimental	False	2	2
SRR12091783	2375	Stengel2020definition	PRO-seq	ligation	experimental	False	3	1
SRR12091784	2376	Stengel2020definition	PRO-seq	ligation	experimental	False	4	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR12091767	H. sapiens	cell line	Kasumi-1
SRR12091768	H. sapiens	cell line	Kasumi-1
SRR12091769	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091770	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091771	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091772	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091773	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091774	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091775	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091776	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091777	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091778	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091779	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091780	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091781	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091782	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091783	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron
SRR12091784	H. sapiens	cell line	Kasumi-1			Aml1-ETO dTAG-inducible degron

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR12091767	no treatment		None	None	None
SRR12091768	no treatment		None	None	None
SRR12091769	no treatment		None	None	None
SRR12091770	no treatment		None	None	None
SRR12091771	treatment	dTAG47 (500 nM)	-30 min	0 min	30 min
SRR12091772	treatment	dTAG47 (500 nM)	-30 min	0 min	30 min
SRR12091773	treatment	dTAG47 (500 nM)	-1 hr	0 hr	1 hr
SRR12091774	treatment	dTAG47 (500 nM)	-1 hr	0 hr	1 hr
SRR12091775	treatment	dTAG47 (500 nM)	-2 hr	0 hr	2 hr
SRR12091776	treatment	dTAG47 (500 nM)	-2 hr	0 hr	2 hr
SRR12091777	treatment	dTAG47 (500 nM)	-6 hr	0 hr	6 hr
SRR12091778	treatment	dTAG47 (500 nM)	-6 hr	0 hr	6 hr
SRR12091779	treatment	dTAG47 (500 nM)	-24 hr	0 hr	1 day
SRR12091780	treatment	dTAG47 (500 nM)	-24 hr	0 hr	1 day
SRR12091781	treatment	GSK2879552 (100 nM)	-24 hr	0 hr	1 day
SRR12091782	treatment	GSK2879552 (100 nM)	-24 hr	0 hr	1 day
SRR12091783	treatment	GSK2879552 (100 nM)	-24 hr	0 hr	1 day
	treatment	dTAG47 (500 nM)	-24 hr	0 hr	1 day
SRR12091784	treatment	GSK2879552 (100 nM)	-24 hr	0 hr	1 day
	treatment	dTAG47 (500 nM)	-24 hr	0 hr	1 day

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR12091767	75	37,967,680	0.45635	0.7976	3.08833	0.67504	1	2
SRR12091768	75	33,532,071	0.45387	0.8049	3.20095	0.66255	1	2
SRR12091769	75	55,732,653	0.48699	0.8569	3.61606	0.68292	1	2
SRR12091770	75	28,789,121	0.49569	0.8155	4.02334	0.61731	1	2
SRR12091771	75	50,273,218	0.49775	0.8694	3.39318	0.65864	1	2
SRR12091772	75	34,783,335	0.45924	0.8532	3.31398	0.66026	1	2
SRR12091773	75	38,008,090	0.47505	0.8522	3.43922	0.65858	1	2
SRR12091774	75	34,042,500	0.44306	0.8561	3.34322	0.67123	1	2
SRR12091775	75	32,770,729	0.44159	0.8289	2.99069	0.66731	1	1
SRR12091776	75	32,755,424	0.4806	0.8075	3.61155	0.64273	1	2
SRR12091777	75	57,967,714	0.50036	0.7956	3.4255	0.6761	2	2
SRR12091778	75	35,314,120	0.44954	0.8086	3.34461	0.67045	1	2
SRR12091779	75	72,642,057	0.66017	0.9208	2.93709	0.5971	3	1
SRR12091780	75	72,662,275	0.64661	0.9252	2.64497	0.62787	2	1
SRR12091781	75	77,202,815	0.58447	0.8812	3.54887	0.62362	2	2
SRR12091782	75	61,628,024	0.61579	0.9334	2.72874	0.64411	2	1
SRR12091783	75	71,067,415	0.65599	0.8939	3.29168	0.56966	3	2
SRR12091784	75	70,116,749	0.89876	0.9468	2.25072	0.39669	4	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR12091767	30049	10029	12994	6652	27790	10240	11597	6067
SRR12091768	28892	9705	12563	6198	25927	10108	10511	5531
SRR12091769	36223	13250	14868	8045	35224	10299	15846	8545
SRR12091770	29293	10432	12586	5786	24324	9885	9673	4779
SRR12091771	33578	11814	14266	7226	32301	10263	14276	7385
SRR12091772	31564	11076	13460	6794	27792	10089	11712	6061
SRR12091773	32637	11243	13900	7179	29209	10113	12472	6516
SRR12091774	31645	10835	13657	7036	28521	10197	12123	6295
SRR12091775	29487	9769	12655	6645	26666	10134	11015	5798
SRR12091776	30029	10641	12846	6226	26001	10014	10595	5478
SRR12091777	36200	12666	15191	8189	35005	10411	15712	8467
SRR12091778	31186	10542	13584	6801	27596	10156	11442	6125
SRR12091779	40368	11882	18687	9008	35937	10086	16107	8978
SRR12091780	39548	11470	18389	8932	36091	10034	16187	9125
SRR12091781	45046	14084	19722	10827	40280	9943	18525	10675
SRR12091782	36281	11004	16586	8173	33303	9870	14790	8179
SRR12091783	39673	11301	18187	9303	36111	10681	15997	8954
SRR12091784	16424	4114	8042	3095	16688	7591	6163	3157