Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR3541132,SRR3541133,SRR3541134,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR3541132 | 2427 | Tan2018dismissal | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR3541133 | 2428 | Tan2018dismissal | GRO-seq | circularization | control | False | 2 | 1 |
| SRR3541134 | 2429 | Tan2018dismissal | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR3541135 | 2430 | Tan2018dismissal | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR3541136 | 2431 | Tan2018dismissal | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR3541137 | 2432 | Tan2018dismissal | GRO-seq | circularization | experimental | False | 2 | 2 |
| SRR3541138 | 2433 | Tan2018dismissal | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR3541139 | 2434 | Tan2018dismissal | GRO-seq | circularization | experimental | False | 2 | 2 |
| SRR3745363 | 2435 | Tan2018dismissal | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR3745364 | 2436 | Tan2018dismissal | GRO-seq | circularization | control | True | 2 | 1 |
| SRR3541128 | 2423 | Tan2018dismissal | PRO-seq | circularization | experimental | False | 3 | 1 |
| SRR3541129 | 2424 | Tan2018dismissal | PRO-seq | circularization | control | False | 2 | 1 |
| SRR3541130 | 2425 | Tan2018dismissal | PRO-seq | circularization | experimental | False | 3 | 1 |
| SRR3541131 | 2426 | Tan2018dismissal | PRO-seq | circularization | experimental | False | 3 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR3541132 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR3541133 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR3541134 | H. sapiens | cell line | MCF7 | siRNA Kdm2a 5'UTR | |||
| SRR3541135 | H. sapiens | cell line | MCF7 | siRNA Kdm2a 5'UTR | |||
| SRR3541136 | H. sapiens | cell line | MCF7 | Kdm2a H212A HA-tag (stable) | siRNA Kdm2a 5'UTR | ||
| SRR3541137 | H. sapiens | cell line | MCF7 | Kdm2a H212A HA-tag (stable) | siRNA Kdm2a 5'UTR | ||
| SRR3541138 | H. sapiens | cell line | MCF7 | Kdm2a HA-tag (stable) | siRNA Kdm2a 5'UTR | ||
| SRR3541139 | H. sapiens | cell line | MCF7 | Kdm2a HA-tag (stable) | siRNA Kdm2a 5'UTR | ||
| SRR3745363 | H. sapiens | cell line | MCF7 | ||||
| SRR3745364 | H. sapiens | cell line | MCF7 | ||||
| SRR3541128 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR3541129 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR3541130 | H. sapiens | cell line | MCF7 | siRNA Kdm2a | |||
| SRR3541131 | H. sapiens | cell line | MCF7 | siRNA Kdm2a |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR3541132 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR3541133 | vehicle | ethanol (0.1%) | -1 hr | 0 hr | 1 hr |
| SRR3541134 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR3541135 | vehicle | ethanol (0.1%) | -1 hr | 0 hr | 1 hr |
| SRR3541136 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR3541137 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR3541138 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR3541139 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR3745363 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR3745364 | vehicle | ethanol (0.1%) | -1 hr | 0 hr | 1 hr |
| SRR3541128 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR3541129 | vehicle | ethanol (0.1%) | -1 hr | 0 hr | 1 hr |
| SRR3541130 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR3541131 | vehicle | ethanol (0.1%) | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR3541132 | 50 | 74,793,850 | 0.55206 | 0.8054 | 2.17486 | 0.64853 | 2 | 1 |
| SRR3541133 | 50 | 62,892,338 | 0.51541 | 0.811 | 2.27477 | 0.65299 | 2 | 1 |
| SRR3541134 | 50 | 41,789,702 | 0.60473 | 0.8494 | 2.34268 | 0.52272 | 2 | 1 |
| SRR3541135 | 50 | 58,106,251 | 0.63209 | 0.8341 | 2.18501 | 0.59248 | 2 | 1 |
| SRR3541136 | 50 | 58,406,996 | 0.62007 | 0.8478 | 2.47912 | 0.51768 | 2 | 1 |
| SRR3541137 | 50 | 42,023,734 | 0.59074 | 0.8404 | 2.47919 | 0.51224 | 2 | 1 |
| SRR3541138 | 50 | 51,553,380 | 0.60807 | 0.8484 | 2.47782 | 0.51648 | 2 | 1 |
| SRR3541139 | 50 | 32,147,984 | 0.6068 | 0.8381 | 2.39698 | 0.49423 | 2 | 1 |
| SRR3745363 | 50 | 47,887,669 | 0.66215 | 0.8717 | 3.6271 | 0.38687 | 3 | 2 |
| SRR3745364 | 50 | 43,348,616 | 0.55859 | 0.8991 | 2.94925 | 0.47781 | 2 | 1 |
| SRR3541128 | 50 | 48,635,147 | 0.69405 | 0.9306 | 5.20936 | 0.33464 | 3 | 3 |
| SRR3541129 | 50 | 48,486,974 | 0.63275 | 0.9281 | 4.5336 | 0.40049 | 2 | 2 |
| SRR3541130 | 50 | 45,866,952 | 0.66965 | 0.9179 | 4.21566 | 0.35765 | 3 | 2 |
| SRR3541131 | 50 | 45,643,926 | 0.68126 | 0.9243 | 4.76941 | 0.3468 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR3541132 | 25490 | 8867 | 10726 | 5173 | 22034 | 7686 | 9815 | 4272 |
| SRR3541133 | 24246 | 8627 | 10423 | 4614 | 20585 | 8126 | 8393 | 4028 |
| SRR3541134 | 17718 | 5384 | 8348 | 2691 | 11981 | 5481 | 4405 | 1935 |
| SRR3541135 | 19688 | 6270 | 8960 | 3315 | 15523 | 6537 | 5997 | 2856 |
| SRR3541136 | 19512 | 6926 | 8278 | 3375 | 15524 | 6485 | 6318 | 2586 |
| SRR3541137 | 17299 | 6132 | 7331 | 2827 | 12502 | 5762 | 4685 | 1933 |
| SRR3541138 | 19228 | 6770 | 8244 | 3201 | 14486 | 6308 | 5748 | 2325 |
| SRR3541139 | 13715 | 4827 | 5780 | 2048 | 9628 | 4807 | 3412 | 1395 |
| SRR3745363 | 25013 | 11140 | 9888 | 3748 | 17973 | 8130 | 6782 | 3101 |
| SRR3745364 | 25124 | 10695 | 9920 | 4514 | 19840 | 8448 | 7873 | 3836 |
| SRR3541128 | 18720 | 9101 | 7516 | 1782 | 14816 | 7385 | 5553 | 1816 |
| SRR3541129 | 20584 | 9236 | 8936 | 2055 | 16341 | 7899 | 6074 | 2319 |
| SRR3541130 | 18466 | 8195 | 7982 | 1723 | 14574 | 7300 | 5436 | 1862 |
| SRR3541131 | 18322 | 8043 | 7930 | 1589 | 13502 | 7036 | 4670 | 1782 |
Top