DBNascent | Samples

SRR5655667,SRR5655668,SRR5655669,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5655667	2437	Tastemel2017transcription	GRO-seq	circularization	control	True	2	1
SRR5655668	2438	Tastemel2017transcription	GRO-seq	circularization	control	True	4	2
SRR5655669	2439	Tastemel2017transcription	GRO-seq	circularization	experimental	False	2	1
SRR5655670	2440	Tastemel2017transcription	GRO-seq	circularization	experimental	False	3	2
SRR5655671	2441	Tastemel2017transcription	GRO-seq	circularization	experimental	False	3	3
SRR5655672	2442	Tastemel2017transcription	GRO-seq	circularization	experimental	False	3	1
SRR5655673	2443	Tastemel2017transcription	GRO-seq	circularization	experimental	False	3	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5655667	M. musculus	cell line	ESC	E14
SRR5655668	M. musculus	cell line	ESC	E14
SRR5655669	M. musculus	cell line	ESC	E14
SRR5655670	M. musculus	cell line	ESC	E14
SRR5655671	M. musculus	cell line	ESC	E14
SRR5655672	M. musculus	cell line	ESC	E14		Spt5 V1008D
SRR5655673	M. musculus	cell line	ESC	E14		Spt5 V1008D

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5655667	no treatment		None	None	None
SRR5655668	no treatment		None	None	None
SRR5655669	treatment	CH99021 (3 microM)	None	None	None
	treatment	PD0325901 (1 microM)	None	None	None
	treatment	serum-free media	None	None	None
SRR5655670	treatment	CH99021 (3 microM)	None	None	None
	treatment	PD0325901 (1 microM)	None	None	None
	treatment	serum-free media	None	None	None
SRR5655671	treatment	CH99021 (3 microM)	None	None	None
	treatment	PD0325901 (1 microM)	None	None	None
	treatment	serum-free media	None	None	None
SRR5655672	treatment	CH99021 (3 microM)	None	None	None
	treatment	PD0325901 (1 microM)	None	None	None
	treatment	serum-free media	None	None	None
SRR5655673	treatment	CH99021 (3 microM)	None	None	None
	treatment	PD0325901 (1 microM)	None	None	None
	treatment	serum-free media	None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5655667	35	46,603,899	0.54234	0.6519	2.59574	0.52961	2	1
SRR5655668	35	50,866,618	0.86057	0.7601	3.5021	0.30873	4	3
SRR5655669	76	42,467,032	0.5562	0.7538	5.50794	0.58181	2	3
SRR5655670	76	50,437,533	0.76785	0.8347	5.5568	0.4505	3	3
SRR5655671	76	52,401,787	0.75826	0.8356	5.42776	0.46243	3	3
SRR5655672	76	40,528,256	0.78838	0.8303	4.7768	0.41654	3	2
SRR5655673	76	44,826,907	0.715	0.841	5.09048	0.50215	3	3

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5655667	32952	8695	10316	10852	27142	7050	8279	9673
SRR5655668	12772	1035	6296	3383	29163	1780	15224	7491
SRR5655669	74819	16117	25642	27924	56819	9079	19857	23102
SRR5655670	61260	13975	21443	20808	47116	9072	15799	18068
SRR5655671	61743	14090	21130	21596	48618	9115	16339	18890
SRR5655672	46297	13332	14869	14389	33072	8946	10159	11460
SRR5655673	59076	15510	19246	19911	43305	9303	14225	16472