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SRR6128874,SRR6128875,SRR6145792,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR6128874 | 2500 | Trizzino2018tumor | GRO-seq | circularization | control | False | 2 | 1 |
| SRR6128875 | 2501 | Trizzino2018tumor | GRO-seq | circularization | experimental | False | 4 | 1 |
| SRR6145792 | 2502 | Trizzino2018tumor | GRO-seq | circularization | control | False | 5 | 2 |
| SRR6145793 | 2503 | Trizzino2018tumor | GRO-seq | circularization | experimental | False | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR6128874 | H. sapiens | cell line | RMG1 | dox-inducible shRNA Arid1A | |||
| SRR6128875 | H. sapiens | cell line | RMG1 | dox-inducible shRNA Arid1A | |||
| SRR6145792 | H. sapiens | cell line | RMG1 | dox-inducible shRNA Arid1A | |||
| SRR6145793 | H. sapiens | cell line | RMG1 | dox-inducible shRNA Arid1A |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR6128874 | no treatment | None | None | None | |
| SRR6128875 | treatment | doxycycline (2 microg/mL) | -3 day | 0 day | 3 day |
| SRR6145792 | no treatment | None | None | None | |
| SRR6145793 | treatment | doxycycline (2 microg/mL) | -3 day | 0 day | 3 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR6128874 | 76 | 111,788,349 | 0.57025 | 0.5181 | 2.3574 | 0.61823 | 2 | 2 |
| SRR6128875 | 76 | 118,572,449 | 0.83655 | 0.4367 | 4.69286 | 0.20563 | 4 | 2 |
| SRR6145792 | 76 | 17,237,468 | 0.65925 | 0.2162 | 3.0 | 0.33402 | 5 | 3 |
| SRR6145793 | 76 | 24,651,034 | 0.91734 | 0.2773 | 3.43103 | 0.07873 | 4 | 3 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR6128874 | 28342 | 6516 | 13517 | 7105 | 21782 | 4969 | 10318 | 6111 |
| SRR6128875 | 17891 | 4738 | 8416 | 3455 | 10383 | 3561 | 4582 | 2377 |
| SRR6145792 | 340 | 43 | 79 | 162 | 322 | 40 | 44 | 165 |
| SRR6145793 | 771 | 74 | 254 | 63 | 619 | 80 | 237 | 101 |
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