DBNascent | Samples

SRR122339,SRR122340,SRR122341

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	QC score	Replicate	Outlier?
SRR122339	2591	Wang2011reprogramming	GRO-seq	circularization	control	3	1	No
SRR122340	2592	Wang2011reprogramming	GRO-seq	circularization	experimental	2	2	No
SRR122341	2593	Wang2011reprogramming	GRO-seq	circularization	experimental	3	3	No

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR122339	H. sapiens	cell line	LNCaP				siRNA control
SRR122340	H. sapiens	cell line	LNCaP				siRNA control
SRR122341	H. sapiens	cell line	LNCaP				siRNA Foxa1

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR122339	no treatment		None	None	None
SRR122340	treatment	dihydrotestosterone	-1 hr	0 hr	1 hr
SRR122341	treatment	dihydrotestosterone	-1 hr	0 hr	1 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR122339	36	21,511,375	0.73458	0.6743	3.90494	0.27821	3	2
SRR122340	36	22,860,216	0.54975	0.6384	2.4411	0.46232	2	1
SRR122341	36	20,727,546	0.65032	0.6942	2.68731	0.36089	3	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR122339	10715	5025	4145	1037	6744	4170	1769	906
SRR122340	11827	4610	5234	1543	6291	3239	2013	1157
SRR122341	11242	5353	4513	1172	6344	3724	1764	969