DBNascent | Samples

SRR10400216,SRR10400217,SRR10400218,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR10400216	2634	Wang2020proapoptotic	GRO-seq	circularization	control	False	1	1
SRR10400217	2635	Wang2020proapoptotic	GRO-seq	circularization	control	False	1	2
SRR10400218	2636	Wang2020proapoptotic	GRO-seq	circularization	experimental	False	1	1
SRR10400219	2637	Wang2020proapoptotic	GRO-seq	circularization	experimental	False	1	2
SRR10400220	2638	Wang2020proapoptotic	GRO-seq	circularization	experimental	False	1	1
SRR10400221	2639	Wang2020proapoptotic	GRO-seq	circularization	experimental	False	1	2
SRR10400222	2640	Wang2020proapoptotic	GRO-seq	circularization	experimental	False	1	1
SRR10400223	2641	Wang2020proapoptotic	GRO-seq	circularization	experimental	False	1	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR10400216	H. sapiens	cell line	MCF7			dox-inducible Pax2 (stable)
SRR10400217	H. sapiens	cell line	MCF7			dox-inducible Pax2 (stable)
SRR10400218	H. sapiens	cell line	MCF7			dox-inducible Pax2 (stable)
SRR10400219	H. sapiens	cell line	MCF7			dox-inducible Pax2 (stable)
SRR10400220	H. sapiens	cell line	MCF7			dox-inducible Pax2 (stable)
SRR10400221	H. sapiens	cell line	MCF7			dox-inducible Pax2 (stable)
SRR10400222	H. sapiens	cell line	MCF7			dox-inducible Pax2 (stable)
SRR10400223	H. sapiens	cell line	MCF7			dox-inducible Pax2 (stable)

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR10400216	vehicle	vehicle	-22 hr	0 hr	22 hr
	vehicle	vehicle	-6 hr	0 hr	6 hr
SRR10400217	vehicle	vehicle	-22 hr	0 hr	22 hr
	vehicle	vehicle	-6 hr	0 hr	6 hr
SRR10400218	treatment	hydroxytamoxifen (1 microM)	-6 hr	0 hr	6 hr
	vehicle	vehicle	-22 hr	0 hr	22 hr
SRR10400219	treatment	hydroxytamoxifen (1 microM)	-6 hr	0 hr	6 hr
	vehicle	vehicle	-22 hr	0 hr	22 hr
SRR10400220	treatment	doxycycline (50 ng/mL)	-22 hr	0 hr	22 hr
	vehicle	vehicle	-6 hr	0 hr	6 hr
SRR10400221	treatment	doxycycline (50 ng/mL)	-22 hr	0 hr	22 hr
	vehicle	vehicle	-6 hr	0 hr	6 hr
SRR10400222	treatment	doxycycline (50 ng/mL)	-22 hr	0 hr	22 hr
	treatment	hydroxytamoxifen (1 microM)	-6 hr	0 hr	6 hr
SRR10400223	treatment	doxycycline (50 ng/mL)	-22 hr	0 hr	22 hr
	treatment	hydroxytamoxifen (1 microM)	-6 hr	0 hr	6 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR10400216	51	36,794,568	0.31826	0.7199	1.72373	0.72293	1	1
SRR10400217	51	22,798,313	0.29918	0.794	1.36881	0.74881	1	1
SRR10400218	51	25,806,788	0.25852	0.8312	1.81128	0.7776	1	1
SRR10400219	51	25,360,923	0.25414	0.8556	1.97338	0.82105	1	1
SRR10400220	51	37,641,751	0.30402	0.6977	1.75233	0.73766	1	1
SRR10400221	51	28,244,490	0.20734	0.884	2.07671	0.85285	1	1
SRR10400222	51	28,160,127	0.23499	0.7859	1.76367	0.80208	1	1
SRR10400223	51	31,671,165	0.23076	0.8824	2.35997	0.83669	1	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR10400216	20437	7142	9385	3251	13036	5710	5067	2407
SRR10400217	22745	8306	9892	4029	12630	6152	4592	2170
SRR10400218	18862	7364	8124	2920	12176	5758	4417	2075
SRR10400219	25585	10697	10313	4649	16519	7663	6150	2970
SRR10400220	20595	7644	9365	2997	13342	5978	5197	2280
SRR10400221	27534	11605	11182	4751	18644	8121	7351	3216
SRR10400222	20215	7556	8891	3081	12721	5993	4793	2092
SRR10400223	29952	12538	11871	5492	20242	8302	8083	3736