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SRR1734841,SRR1734842,SRR1734843,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1734841 | 2752 | Zhang2015enhancer | GRO-seq | circularization | control | True | 3 | 1 |
| SRR1734842 | 2753 | Zhang2015enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR1734843 | 2754 | Zhang2015enhancer | GRO-seq | circularization | experimental | False | 1 | 1 |
| SRR1734844 | 2755 | Zhang2015enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1734841 | M. musculus | cell line | AtT20 | ||||
| SRR1734842 | M. musculus | cell line | AtT20 | siRNA Ldb1 | |||
| SRR1734843 | M. musculus | cell line | AtT20 | siRNA Mash1 | |||
| SRR1734844 | M. musculus | cell line | AtT20 | siRNA Tbx19 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1734841 | no treatment | None | None | None | |
| SRR1734842 | no treatment | None | None | None | |
| SRR1734843 | no treatment | None | None | None | |
| SRR1734844 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1734841 | 48 | 31,689,105 | 0.71378 | 0.5748 | 4.15246 | 0.32698 | 3 | 2 |
| SRR1734842 | 48 | 32,935,925 | 0.62437 | 0.656 | 3.56561 | 0.41333 | 2 | 2 |
| SRR1734843 | 48 | 50,591,733 | 0.45627 | 0.7393 | 2.59505 | 0.60954 | 1 | 1 |
| SRR1734844 | 48 | 31,829,784 | 0.62063 | 0.6293 | 4.18417 | 0.43409 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1734841 | 23230 | 8828 | 8161 | 3443 | 16321 | 6507 | 4446 | 2863 |
| SRR1734842 | 25448 | 9148 | 8801 | 5112 | 19219 | 6964 | 5776 | 4290 |
| SRR1734843 | 25477 | 9219 | 8026 | 6227 | 25304 | 7290 | 9030 | 6989 |
| SRR1734844 | 25734 | 9857 | 8686 | 4439 | 18814 | 6821 | 5423 | 3818 |
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