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SRR10439768,SRR10439769,SRR10439770,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR10439768 | 2804 | Zhang2020bcatenin | GRO-seq | circularization | control | True | 5 | 1 |
| SRR10439769 | 2805 | Zhang2020bcatenin | GRO-seq | circularization | control | True | 5 | 2 |
| SRR10439770 | 2806 | Zhang2020bcatenin | GRO-seq | circularization | experimental | False | 5 | 1 |
| SRR10439771 | 2807 | Zhang2020bcatenin | GRO-seq | circularization | experimental | False | 5 | 2 |
| SRR10439772 | 2808 | Zhang2020bcatenin | GRO-seq | circularization | experimental | False | 5 | 1 |
| SRR10439773 | 2809 | Zhang2020bcatenin | GRO-seq | circularization | experimental | False | 5 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR10439768 | M. musculus | cell line | ESC | ||||
| SRR10439769 | M. musculus | cell line | ESC | ||||
| SRR10439770 | M. musculus | cell line | ESC | ||||
| SRR10439771 | M. musculus | cell line | ESC | ||||
| SRR10439772 | M. musculus | cell line | ESC | Gsk3 -/- | |||
| SRR10439773 | M. musculus | cell line | ESC | Gsk3 -/- |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR10439768 | no treatment | None | None | None | |
| SRR10439769 | no treatment | None | None | None | |
| SRR10439770 | treatment | PD0325901 (1 microM) | None | None | None |
| treatment | CHIR99021 (3 microM) | None | None | None | |
| SRR10439771 | treatment | PD0325901 (1 microM) | None | None | None |
| treatment | CHIR99021 (3 microM) | None | None | None | |
| SRR10439772 | no treatment | None | None | None | |
| SRR10439773 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR10439768 | 150 | 21,609,818 | 0.61565 | 0.0696 | 2.15179 | 0.24208 | 5 | 1 |
| SRR10439769 | 150 | 14,077,552 | 0.59947 | 0.0927 | 2.17822 | 0.24799 | 5 | 1 |
| SRR10439770 | 150 | 24,894,386 | 0.66613 | 0.0602 | 1.7037 | 0.19276 | 5 | 1 |
| SRR10439771 | 150 | 20,486,015 | 0.67452 | 0.0934 | 1.74286 | 0.19742 | 5 | 1 |
| SRR10439772 | 150 | 28,442,786 | 0.64064 | 0.0673 | 1.8227 | 0.23103 | 5 | 1 |
| SRR10439773 | 150 | 17,964,978 | 0.63005 | 0.0696 | 1.79787 | 0.21876 | 5 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR10439768 | 1582 | 529 | 387 | 241 | 67 | 6 | 23 | 37 |
| SRR10439769 | 1220 | 288 | 282 | 239 | 64 | 6 | 23 | 32 |
| SRR10439770 | 1929 | 704 | 523 | 379 | 64 | 6 | 22 | 34 |
| SRR10439771 | 2392 | 663 | 680 | 483 | 79 | 6 | 28 | 43 |
| SRR10439772 | 2199 | 834 | 574 | 358 | 73 | 10 | 26 | 36 |
| SRR10439773 | 960 | 290 | 235 | 200 | 56 | 6 | 20 | 29 |
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